Resource

Id DNase-seq/ENCSR000EKWcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"]
Description
Labels
  • accession: ENCSR000EKW
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0001203/
  • biosample_summary: Homo sapiens MCF-7 expressing RNAi
  • date_created: 2013-12-12T07:07:49.496868+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EKW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: expressing RNAi
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EKW float

DNase-seq_ENCSR000EKW
DNase-seq ENCSR000EKW [biosample_summary="Homo sapiens MCF-7 expressing RNAi"]
 HISTOGRAM FOR DNase-seq_ENCSR000EKW [5, 283]
n
172,474
mean
22.2
sd
20.4

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1724740.01% 1149
chr1 19350 0.01% 129
chr2 11400 <0.01% 76
chr3 10650 0.01% 71
chr4 1950 <0.01% 13
chr5 9750 0.01% 65
chr6 6300 <0.01% 42
chr7 9300 0.01% 62
chr8 8850 0.01% 59
chr9 9061 0.01% 60
chr10 3150 <0.01% 21
chr11 7800 0.01% 52
chr12 10200 0.01% 67
chr13 3300 <0.01% 22
chr14 7800 0.01% 52
chr15 4950 <0.01% 33
chr16 7800 0.01% 52
chr17 13500 0.02% 90
chr18 900 <0.01% 6
chr19 10200 0.02% 68
chr20 8463 0.01% 57
chr21 1500 <0.01% 10
chr22 2100 <0.01% 14
chrX 4200 <0.01% 28
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 1149 63 300 150.11 150
global segment-length histogram

Files

Filename Size md5
ENCFF312KXH.bed.gz 12.33 KB 7099a992578e8fc728c2b8551db995e1
ENCFF312KXH.tabix.bed.gz 10.42 KB 11976903bf031c5cf51e7158098044ff
ENCFF312KXH.tabix.bed.gz.tbi 16.42 KB e888bec652be081eb93087d9936cc925
genomic_resource.yaml 1.92 KB b5b75a0e3e712208a942d03c6551a742
statistics/