type: position_score
table:
  filename: ENCFF628UDH.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EKQ
  column_index: 3
  type: float
  desc: 'DNase-seq ENCSR000EKQ [biosample_summary="Homo sapiens K562 G1 phase"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EKQ [biosample_summary="Homo sapiens K562 G1 phase"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: G1 phase


    **output\_type**: peaks


    **audit\_internal\_action**: Released analysis {ENCAN856HRK|/analyses/ENCAN856HRK/}
    has in progress subobject document {687d5617-4d01-4e29-9d50-0c32f53bce71|/documents/687d5617-4d01-4e29-9d50-0c32f53bce71/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF708UMH|/files/ENCFF708UMH/} processed by DNase-seq ENCODE4
    v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly  have
    a SPOT1 score of 0.27. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EKQ
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: G1 phase
    biosample_summary: Homo sapiens K562 G1 phase
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_EFO_0002067/
    perturbed: false
    doi: 10.17989/ENCSR000EKQ
    date_created: '2014-01-30T18:55:42.143030+00:00'
    date_released: '2012-08-28'
    submitter_comment: ''