Resource
| Id | DNase-seq/ENCSR000EJQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EJQ [biosample_summary="Homo sapiens heart tissue male adult (27 years) and male adult (35 years)"] |
| Description |
status: released biological_replicates: Rep 2 summary: male adult (35 years) male adult (27 years) output_type: peaks audit_internal_action: Released analysis {ENCAN709MWN|/analyses/ENCAN709MWN/} has in progress subobject document {e9562bd6-4712-4a17-ae3c-1f82216f99ec|/documents/e9562bd6-4712-4a17-ae3c-1f82216f99ec/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF916MAS|/files/ENCFF916MAS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.31. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF933GFX|/files/ENCFF933GFX/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.34. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJQ | float |
DNase-seq_ENCSR000EJQ |
DNase-seq ENCSR000EJQ [biosample_summary="Homo sapiens heart tissue male adult (27 years) and male adult (35 years)"]
|
 |
[0.0676, 44.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11161577 | 0.35% | 60980 |
| chr1 | 1067130 | 0.43% | 5806 |
| chr2 | 785701 | 0.32% | 4376 |
| chr3 | 629187 | 0.32% | 3479 |
| chr4 | 380639 | 0.20% | 2117 |
| chr5 | 471130 | 0.26% | 2655 |
| chr6 | 592174 | 0.35% | 3254 |
| chr7 | 514219 | 0.32% | 2863 |
| chr8 | 449507 | 0.31% | 2496 |
| chr9 | 485533 | 0.35% | 2652 |
| chr10 | 509588 | 0.38% | 2845 |
| chr11 | 631308 | 0.47% | 3399 |
| chr12 | 549952 | 0.41% | 3030 |
| chr13 | 221080 | 0.19% | 1250 |
| chr14 | 338800 | 0.32% | 1865 |
| chr15 | 368741 | 0.36% | 2012 |
| chr16 | 469495 | 0.52% | 2540 |
| chr17 | 703901 | 0.85% | 3766 |
| chr18 | 191222 | 0.24% | 1061 |
| chr19 | 811373 | 1.38% | 4130 |
| chr20 | 325712 | 0.51% | 1797 |
| chr21 | 139376 | 0.30% | 739 |
| chr22 | 302779 | 0.60% | 1619 |
| chrX | 218795 | 0.14% | 1204 |
| chrY | 4235 | 0.01% | 25 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 60980 | 2 | 802 | 183.04 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF326DYD.bed.gz | 669.83 KB | b6fb99bee2b21d4fb1fc0eed8e4886d8 |
| ENCFF326DYD.tabix.bed.gz | 609.17 KB | 83143f0277ab64b0b521f442c3ed3900 |
| ENCFF326DYD.tabix.bed.gz.tbi | 269.04 KB | 5e78e75b609cafd6ca733bc2edcc1c15 |
| genomic_resource.yaml | 3.16 KB | 983dcf721967f6dc642bdf9ba6ad8ce1 |
| statistics/ |