Resource

Id DNase-seq/ENCSR000EJNcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJN [biosample_summary="Homo sapiens H1"]
Description
Labels
  • accession: ENCSR000EJN
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0003042/
  • biosample_summary: Homo sapiens H1
  • date_created: 2013-12-12T07:07:30.182130+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EJN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJN float

DNase-seq_ENCSR000EJN
DNase-seq ENCSR000EJN [biosample_summary="Homo sapiens H1"]
 HISTOGRAM FOR DNase-seq_ENCSR000EJN [0.0871, 35.3]
n
19,197,579
mean
2.52
sd
2.43

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 191975790.60% 98943
chr1 1769384 0.71% 8976
chr2 1264060 0.52% 6657
chr3 957455 0.48% 5093
chr4 766866 0.40% 3977
chr5 872450 0.48% 4577
chr6 861167 0.50% 4559
chr7 987955 0.62% 5123
chr8 797636 0.55% 4155
chr9 933611 0.67% 4684
chr10 865043 0.65% 4477
chr11 1125350 0.83% 5727
chr12 871292 0.65% 4554
chr13 376733 0.33% 2009
chr14 674873 0.63% 3441
chr15 575874 0.56% 2953
chr16 809436 0.90% 4134
chr17 1112831 1.34% 5646
chr18 355721 0.44% 1857
chr19 1427173 2.43% 6980
chr20 585395 0.91% 2976
chr21 230912 0.49% 1222
chr22 548592 1.08% 2819
chrX 418526 0.27% 2292
chrY 9244 0.02% 55
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 98943 1 1420 194.03 180
global segment-length histogram

Files

Filename Size md5
ENCFF726ZCF.bed.gz 1.03 MB 99fbe1f22cd06dff959af19ff4429d5f
ENCFF726ZCF.tabix.bed.gz 967.66 KB 06571a82eb9f7d9d00e1f8c614d7697c
ENCFF726ZCF.tabix.bed.gz.tbi 335.55 KB 547a60a75833a72ed41356d9413161ad
genomic_resource.yaml 1.27 KB 4db9c59319b2e3f01e99d628970f7373
statistics/