Resource

Id DNase-seq/ENCSR000EJGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJG [biosample_summary="Homo sapiens GM13976"]
Description
Labels
  • accession: ENCSR000EJG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005345/
  • biosample_summary: Homo sapiens GM13976
  • date_created: 2013-12-12T07:07:25.437630+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EJG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment: The data quality is too poor for processing.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJG float

DNase-seq_ENCSR000EJG
DNase-seq ENCSR000EJG [biosample_summary="Homo sapiens GM13976"]
 HISTOGRAM FOR DNase-seq_ENCSR000EJG [0.0281, 14.3]
n
22,409,786
mean
1.12
sd
1.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 224097860.70% 114653
chr1 2102214 0.84% 10577
chr2 1708951 0.71% 8772
chr3 1238159 0.62% 6450
chr4 869121 0.46% 4505
chr5 1052691 0.58% 5495
chr6 1289564 0.75% 6589
chr7 1111258 0.70% 5619
chr8 966252 0.67% 4927
chr9 971436 0.70% 4982
chr10 1089920 0.81% 5501
chr11 1252844 0.93% 6346
chr12 1131799 0.85% 5761
chr13 463782 0.41% 2391
chr14 783479 0.73% 4009
chr15 773128 0.76% 3987
chr16 807920 0.89% 4183
chr17 1160272 1.39% 5959
chr18 408275 0.51% 2118
chr19 1168268 1.99% 5801
chr20 645075 1.00% 3330
chr21 256321 0.55% 1328
chr22 585463 1.15% 2949
chrX 562319 0.36% 3014
chrY 11275 0.02% 60
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 114653 1 1280 195.46 180
global segment-length histogram

Files

Filename Size md5
ENCFF535JRP.bed.gz 1.2 MB 8dcf559022fa2dbf549e4afa8bd8446b
ENCFF535JRP.tabix.bed.gz 1.12 MB 329bda24fd522f384dfc7f8d947e45ed
ENCFF535JRP.tabix.bed.gz.tbi 386.46 KB 090959bbd2066abde65dbce96af11146
genomic_resource.yaml 2.17 KB ef1e3656e5923754745bb71e43a8480c
statistics/