Resource

Id DNase-seq/ENCSR000EJFcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJF [biosample_summary="Homo sapiens GM12892"]
Description
Labels
  • accession: ENCSR000EJF
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0002786/
  • biosample_summary: Homo sapiens GM12892
  • date_created: 2014-01-30T18:54:39.133019+00:00
  • date_released: 2011-04-19
  • doi: 10.17989/ENCSR000EJF
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJF float

DNase-seq_ENCSR000EJF
DNase-seq ENCSR000EJF [biosample_summary="Homo sapiens GM12892"]
 HISTOGRAM FOR DNase-seq_ENCSR000EJF [4, 1.37e+03]
n
15,660,553
mean
82.7
sd
99

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 156605530.49% 103995
chr1 1406478 0.56% 9351
chr2 961612 0.40% 6393
chr3 770122 0.39% 5121
chr4 594904 0.31% 3949
chr5 612749 0.34% 4074
chr6 693155 0.41% 4610
chr7 710292 0.45% 4715
chr8 633420 0.44% 4194
chr9 817043 0.59% 5416
chr10 621677 0.46% 4134
chr11 950733 0.70% 6303
chr12 650252 0.49% 4325
chr13 242695 0.21% 1614
chr14 502082 0.47% 3336
chr15 419275 0.41% 2781
chr16 800210 0.89% 5313
chr17 1136820 1.37% 7545
chr18 233342 0.29% 1554
chr19 1299296 2.22% 8616
chr20 436208 0.68% 2902
chr21 173963 0.37% 1161
chr22 604504 1.19% 4000
chrX 388671 0.25% 2581
chrY 1050 <0.01% 7
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 103995 9 537 150.59 150
global segment-length histogram

Files

Filename Size md5
ENCFF647DEH.bed.gz 990.03 KB a194973e1d9b45dee5b6fd448501c82f
ENCFF647DEH.tabix.bed.gz 850.44 KB af6f2d182e8613498ad6026ffb6e045c
ENCFF647DEH.tabix.bed.gz.tbi 314.23 KB 6f927fa0191e6b040090be59d9e97fef
genomic_resource.yaml 1.26 KB 534f0cfc3c63b222445bc9c94201ef8d
statistics/