Resource
| Id | DNase-seq/ENCSR000EJC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: peaks audit_error: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF756GZS|/files/ENCFF756GZS/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.24. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) audit_internal_action: Released analysis {ENCAN205JWF|/analyses/ENCAN205JWF/} has in progress subobject document {fd78bc8e-3f52-4133-9d25-4accb9ca3ac9|/documents/fd78bc8e-3f52-4133-9d25-4accb9ca3ac9/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EJC | float |
DNase-seq_ENCSR000EJC |
DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"]
|
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[0.0387, 16] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 18372928 | 0.57% | 97033 |
| chr1 | 1746085 | 0.70% | 9147 |
| chr2 | 1354196 | 0.56% | 7211 |
| chr3 | 1087147 | 0.55% | 5786 |
| chr4 | 788165 | 0.41% | 4160 |
| chr5 | 908350 | 0.50% | 4799 |
| chr6 | 1087650 | 0.64% | 5736 |
| chr7 | 896284 | 0.56% | 4731 |
| chr8 | 798070 | 0.55% | 4270 |
| chr9 | 777545 | 0.56% | 4120 |
| chr10 | 849197 | 0.63% | 4466 |
| chr11 | 980162 | 0.73% | 5203 |
| chr12 | 925763 | 0.69% | 4896 |
| chr13 | 400353 | 0.35% | 2123 |
| chr14 | 633077 | 0.59% | 3322 |
| chr15 | 619476 | 0.61% | 3271 |
| chr16 | 666595 | 0.74% | 3523 |
| chr17 | 978587 | 1.18% | 5103 |
| chr18 | 374625 | 0.47% | 2015 |
| chr19 | 990847 | 1.69% | 4982 |
| chr20 | 481109 | 0.75% | 2582 |
| chr21 | 189720 | 0.41% | 1009 |
| chr22 | 389480 | 0.77% | 2057 |
| chrX | 435433 | 0.28% | 2432 |
| chrY | 15012 | 0.03% | 89 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 97033 | 1 | 1260 | 189.35 | 180 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF126AGH.bed.gz | 1.03 MB | 38fa9bad5d56f91972f4e12ee5045750 |
| ENCFF126AGH.tabix.bed.gz | 973.58 KB | dd37a283b7dc8cbdd9d980134dce81e0 |
| ENCFF126AGH.tabix.bed.gz.tbi | 361.91 KB | 74633868521aae4ed55e264bd357e07a |
| genomic_resource.yaml | 2.13 KB | a30ae35b5f9f6608ebcf4bda34fd06f6 |
| statistics/ |
