Resource

Id DNase-seq/ENCSR000EJCcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"]
Description
Labels
  • accession: ENCSR000EJC
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005335/
  • biosample_summary: Homo sapiens GM10266
  • date_created: 2013-12-12T07:07:23.373659+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EJC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJC float

DNase-seq_ENCSR000EJC

DNase-seq ENCSR000EJC [biosample_summary="Homo sapiens GM10266"]
HISTOGRAM FOR DNase-seq_ENCSR000EJC [0.0387, 16]
n
18,372,928
mean
1.11
sd
1.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 183729280.57% 97033
chr1 1746085 0.70% 9147
chr2 1354196 0.56% 7211
chr3 1087147 0.55% 5786
chr4 788165 0.41% 4160
chr5 908350 0.50% 4799
chr6 1087650 0.64% 5736
chr7 896284 0.56% 4731
chr8 798070 0.55% 4270
chr9 777545 0.56% 4120
chr10 849197 0.63% 4466
chr11 980162 0.73% 5203
chr12 925763 0.69% 4896
chr13 400353 0.35% 2123
chr14 633077 0.59% 3322
chr15 619476 0.61% 3271
chr16 666595 0.74% 3523
chr17 978587 1.18% 5103
chr18 374625 0.47% 2015
chr19 990847 1.69% 4982
chr20 481109 0.75% 2582
chr21 189720 0.41% 1009
chr22 389480 0.77% 2057
chrX 435433 0.28% 2432
chrY 15012 0.03% 89
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 97033 1 1260 189.35 180
global segment-length histogram

Files

Filename Size md5
ENCFF126AGH.bed.gz 1.03 MB 38fa9bad5d56f91972f4e12ee5045750
ENCFF126AGH.tabix.bed.gz 973.58 KB dd37a283b7dc8cbdd9d980134dce81e0
ENCFF126AGH.tabix.bed.gz.tbi 361.91 KB 74633868521aae4ed55e264bd357e07a
genomic_resource.yaml 2.13 KB a30ae35b5f9f6608ebcf4bda34fd06f6
statistics/