Resource

Id DNase-seq/ENCSR000EJBcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EJB [biosample_summary="Homo sapiens GM10248"]
Description
Labels
  • accession: ENCSR000EJB
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0005334/
  • biosample_summary: Homo sapiens GM10248
  • date_created: 2013-12-12T07:07:22.558603+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EJB
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EJB float

DNase-seq_ENCSR000EJB
DNase-seq ENCSR000EJB [biosample_summary="Homo sapiens GM10248"]
 HISTOGRAM FOR DNase-seq_ENCSR000EJB [5, 9.94e+03]
n
59,710,066
mean
103
sd
195

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 597100661.86% 396705
chr1 5706197 2.29% 37891
chr2 4041235 1.67% 26855
chr3 3258913 1.64% 21630
chr4 2189091 1.15% 14531
chr5 2629661 1.45% 17479
chr6 2967788 1.74% 19716
chr7 2918104 1.83% 19392
chr8 2303305 1.59% 15301
chr9 2542939 1.84% 16894
chr10 2635700 1.97% 17526
chr11 2899733 2.15% 19268
chr12 3135412 2.35% 20833
chr13 1038518 0.91% 6897
chr14 1875741 1.75% 12457
chr15 1948698 1.91% 12942
chr16 2880249 3.19% 19140
chr17 3936754 4.73% 26173
chr18 1071751 1.33% 7134
chr19 4140415 7.06% 27520
chr20 1805110 2.80% 11998
chr21 580684 1.24% 3853
chr22 1939290 3.82% 12878
chrX 1215340 0.78% 8069
chrY 49438 0.09% 328
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 396705 1 600 150.52 150
global segment-length histogram

Files

Filename Size md5
ENCFF038OMI.bed.gz 3.55 MB 6cdd49102c23f6a5eefe1eed2b4b64ec
ENCFF038OMI.tabix.bed.gz 3.05 MB c9b0233000bcba861373a6073316573f
ENCFF038OMI.tabix.bed.gz.tbi 539.71 KB a20fa9322560c1faf9fb9b0ead5e7a51
genomic_resource.yaml 1.26 KB 9f7050078063d6710c41f44ae97eafb5
statistics/