Resource

Id DNase-seq/ENCSR000EIZcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EIZ [biosample_summary="Homo sapiens germinal center tissue"]
Description
Labels
  • accession: ENCSR000EIZ
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0010754/
  • biosample_summary: Homo sapiens germinal center tissue
  • date_created: 2013-12-12T07:07:21.295740+00:00
  • date_released: 2012-08-28
  • doi: 10.17989/ENCSR000EIZ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EIZ float

DNase-seq_ENCSR000EIZ

DNase-seq ENCSR000EIZ [biosample_summary="Homo sapiens germinal center tissue"]
HISTOGRAM FOR DNase-seq_ENCSR000EIZ [8.94, 243]
n
117,955
mean
43.5
sd
25.8

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 117955<0.01% 908
chr1 14281 0.01% 109
chr2 6701 <0.01% 54
chr3 7498 <0.01% 61
chr4 3028 <0.01% 24
chr5 5428 <0.01% 42
chr6 6031 <0.01% 47
chr7 6546 <0.01% 49
chr8 3756 <0.01% 28
chr9 5091 <0.01% 38
chr10 4685 <0.01% 38
chr11 5364 <0.01% 41
chr12 6402 <0.01% 48
chr13 2355 <0.01% 16
chr14 3371 <0.01% 25
chr15 3820 <0.01% 29
chr16 5344 0.01% 41
chr17 6659 0.01% 52
chr18 2062 <0.01% 15
chr19 9515 0.02% 70
chr20 3295 0.01% 26
chr21 856 <0.01% 7
chr22 3180 0.01% 26
chrX 2687 <0.01% 22
3343 contigs with no values (186304500 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 908 29 320 129.91 140
global segment-length histogram

Files

Filename Size md5
ENCFF886AFK.bed.gz 10.45 KB 17d1f80b72989f72ee489b8d2408e08d
ENCFF886AFK.tabix.bed.gz 9.02 KB 34328f9ea7755e7af116aada179af8de
ENCFF886AFK.tabix.bed.gz.tbi 14.27 KB 5d20127f05523d163f32398273305d4c
genomic_resource.yaml 1.54 KB 61cebcd5f123ffcc704ef4195285bd1f
statistics/