Resource
| Id | DNase-seq/ENCSR000EIY |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | DNase-seq ENCSR000EIY [biosample_summary="Homo sapiens frontal cortex tissue female adult (67 years) and female adult (80 years)"] |
| Description |
status: released biological_replicates: Rep 2 summary: female adult (80 years) female adult (67 years) output_type: peaks audit_internal_action: Released analysis {ENCAN775PAI|/analyses/ENCAN775PAI/} has in progress subobject document {8a9fa208-e9e5-48e8-b04d-e453342c81d0|/documents/8a9fa208-e9e5-48e8-b04d-e453342c81d0/} audit_warning: Signal Portion of Tags (SPOT) is a measure of enrichment, analogous to the commonly used fraction of reads in peaks metric. ENCODE processed alignment files {ENCFF948TWI|/files/ENCFF948TWI/} processed by DNase-seq ENCODE4 v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly have a SPOT1 score of 0.32. According to ENCODE standards, SPOT1 score of 0.4 or higher is considered a product of high quality data. Any sample with a SPOT1 score <0.3 should be targeted for replacement with a higher quality sample, and a SPOT1 score of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data standards|/data-standards/dnase-seq-encode4/}) |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| DNase-seq_ENCSR000EIY | float |
DNase-seq_ENCSR000EIY |
DNase-seq ENCSR000EIY [biosample_summary="Homo sapiens frontal cortex tissue female adult (67 years) and female adult (80 years)"]
|
 |
[0.0816, 39.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 11314974 | 0.35% | 57282 |
| chr1 | 1065383 | 0.43% | 5372 |
| chr2 | 818506 | 0.34% | 4143 |
| chr3 | 619946 | 0.31% | 3154 |
| chr4 | 441703 | 0.23% | 2197 |
| chr5 | 512417 | 0.28% | 2675 |
| chr6 | 565556 | 0.33% | 2865 |
| chr7 | 538383 | 0.34% | 2761 |
| chr8 | 413079 | 0.28% | 2151 |
| chr9 | 506085 | 0.37% | 2551 |
| chr10 | 543426 | 0.41% | 2749 |
| chr11 | 630323 | 0.47% | 3227 |
| chr12 | 538379 | 0.40% | 2744 |
| chr13 | 233568 | 0.20% | 1173 |
| chr14 | 388046 | 0.36% | 1938 |
| chr15 | 384478 | 0.38% | 1959 |
| chr16 | 462040 | 0.51% | 2383 |
| chr17 | 691357 | 0.83% | 3486 |
| chr18 | 194949 | 0.24% | 981 |
| chr19 | 791740 | 1.35% | 3813 |
| chr20 | 332149 | 0.52% | 1721 |
| chr21 | 110864 | 0.24% | 573 |
| chr22 | 282085 | 0.56% | 1417 |
| chrX | 250115 | 0.16% | 1245 |
| chrY | 397 | <0.01% | 4 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 57282 | 1 | 1040 | 197.53 | 190 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF635VUD.bed.gz | 620.22 KB | 555b0dce2d224fc1764624df7cb077f8 |
| ENCFF635VUD.tabix.bed.gz | 571.52 KB | c4940696352962f1566d1c74de98670a |
| ENCFF635VUD.tabix.bed.gz.tbi | 235.23 KB | d86f72c4ccdee069250bc62956bf288a |
| genomic_resource.yaml | 2.39 KB | f86f29ef9fac808656e07bb0ecb02818 |
| statistics/ |