type: position_score
table:
  filename: ENCFF900SLD.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: DNase-seq_ENCSR000EIR
  column_index: 3
  type: float
  desc: signal
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'DNase-seq ENCSR000EIR [TISSUE: Homo sapiens GM03348 genetically modified
    (insertion) using transduction targeting H. sapiens MYOD1]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: genetically modified (insertion) using transduction targeting H.
    sapiens MYOD1


    **output\_type**: peaks


    **audit\_internal\_action**: Released analysis {ENCAN288CIU|/analyses/ENCAN288CIU/}
    has in progress subobject document {73c35abd-510b-4781-a547-daefb0ea5a40|/documents/73c35abd-510b-4781-a547-daefb0ea5a40/}


    **audit\_warning**: Signal Portion of Tags (SPOT) is a measure of enrichment,
    analogous to the commonly used fraction of reads in peaks metric. ENCODE processed
    alignment files {ENCFF337NRJ|/files/ENCFF337NRJ/} processed by DNase-seq ENCODE4
    v3.0.0 GRCh38 pipeline ({ENCPL848KLD|/pipelines/ENCPL848KLD/}) for GRCh38 assembly  have
    a SPOT1 score of 0.33. According to ENCODE standards, SPOT1 score of 0.4 or higher
    is considered a product of high quality data. Any sample with a SPOT1 score <0.3
    should be targeted for replacement with a higher quality sample, and a SPOT1 score
    of 0.25 is considered minimally acceptable SPOT1 score of 0.25 is considered minimally
    acceptable for rare and hard to find primary tissues. (See {ENCODE DNase-seq data
    standards|/data-standards/dnase-seq-encode4/})'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR000EIR
    status: released
    assay_term_name: DNase-seq
    simple_biosample_summary: genetically modified (insertion) using transduction
      targeting H. sapiens MYOD1
    biosample_summary: Homo sapiens GM03348 genetically modified (insertion) using
      transduction targeting H. sapiens MYOD1
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_CLO_0016536/
    perturbed: false
    doi: 10.17989/ENCSR000EIR
    date_created: '2014-01-30T18:56:53.620651+00:00'
    date_released: '2012-08-28'
    submitter_comment: The data quality is too poor for processing.