Resource

Id DNase-seq/ENCSR000EIGcontent_copy
Type position_score
Version 0
Summary DNase-seq ENCSR000EIG [biosample_summary="Homo sapiens T-helper 1 cell"]
Description
Labels
  • accession: ENCSR000EIG
  • assay_term_name: DNase-seq
  • biosample_ontology: /biosample-types/primary_cell_CL_0000545/
  • biosample_summary: Homo sapiens T-helper 1 cell
  • date_created: 2013-12-12T07:07:11.649765+00:00
  • date_released: 2012-03-28
  • doi: 10.17989/ENCSR000EIG
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: mixed sex
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
DNase-seq_ENCSR000EIG float

DNase-seq_ENCSR000EIG

DNase-seq ENCSR000EIG [biosample_summary="Homo sapiens T-helper 1 cell"]
HISTOGRAM FOR DNase-seq_ENCSR000EIG [0.0948, 40.1]
n
16,988,420
mean
2.28
sd
3.03

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 169884200.53% 101215
chr1 1589361 0.64% 9376
chr2 1113979 0.46% 6667
chr3 806888 0.41% 4909
chr4 558832 0.29% 3473
chr5 659396 0.36% 3998
chr6 695649 0.41% 4217
chr7 768331 0.48% 4603
chr8 590956 0.41% 3490
chr9 777573 0.56% 4684
chr10 624244 0.47% 3737
chr11 999455 0.74% 5881
chr12 822624 0.62% 4936
chr13 253465 0.22% 1596
chr14 557861 0.52% 3333
chr15 459846 0.45% 2772
chr16 864344 0.96% 5082
chr17 1293290 1.55% 7561
chr18 205587 0.26% 1250
chr19 1593989 2.72% 9044
chr20 503126 0.78% 3003
chr21 204546 0.44% 1213
chr22 708042 1.39% 4219
chrX 327747 0.21% 2110
chrY 9289 0.02% 61
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 101215 1 920 167.84 160
global segment-length histogram

Files

Filename Size md5
ENCFF406MTD.bed.gz 1.03 MB 077536e409df075ef77691527be9a7fc
ENCFF406MTD.tabix.bed.gz 960.56 KB f254a97e6e1cdffea7f54c6738330fde
ENCFF406MTD.tabix.bed.gz.tbi 270.04 KB abf626d229befac9053c8d761fa488de
genomic_resource.yaml 2.14 KB 4d3b0e6b64f3c89894ed878af8d9f434
statistics/