type: position_score
table:
  filename: ENCFF792EFB.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR983HXF
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR983HXF [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR983HXF [biosample_summary="Homo sapiens activated naive CD8-positive, alpha-beta T cell nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days"]'
  description: '**status**: released


    **biological\_replicates**: Rep 1


    **summary**: male adult (30 years) treated with anti-CD3 and anti-CD28 coated
    beads for 7 days, 10 ng/mL Interleukin-2 for 5 days nuclear fraction


    **output\_type**: pseudoreplicated peaks


    **audit\_internal\_action**: Released analysis {ENCAN325KAH|/analyses/ENCAN325KAH/}
    has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}


    **audit\_warning**: Alignment file {ENCFF980SRE|/files/ENCFF980SRE/} processed
    by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline has 23566637 usable fragments. According
    to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline
    should have > 25 million usable fragments. 20-25 million is acceptable and < 15
    million is not compliant.


    **audit\_warning**: NRF (Non Redundant Fraction) is equal to the result of the
    division of the number of reads after duplicates removal by the total number of
    reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate
    complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but >
    0.7 is acceptable. ENCODE processed file {ENCFF980SRE|/files/ENCFF980SRE/} processed
    by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with
    NRF value of 0.864714.'
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR983HXF
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: male adult (30 years) treated with anti-CD3 and anti-CD28
      coated beads for 7 days, 10 ng/mL Interleukin-2 for 5 days nuclear fraction
    biosample_summary: Homo sapiens activated naive CD8-positive, alpha-beta T cell
      nuclear fraction male adult (30 years) treated with anti-CD3 and anti-CD28 coated
      beads for 7 days, 10 ng/mL Interleukin-2 for 5 days
    replication_type: unreplicated
    biosample_ontology: /biosample-types/primary_cell_NTR_0000502/
    perturbed: false
    doi: 10.17989/ENCSR983HXF
    date_created: '2021-06-16T14:46:27.576648+00:00'
    date_released: '2021-08-05'
    submitter_comment: ''