Resource
| Id | ATAC-seq/ENCSR977LVI |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR977LVI [biosample_summary="Homo sapiens T-cell female adult (21 years)"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (21 years) output_type: replicated peaks audit_internal_action: Released analysis {ENCAN976NRE|/analyses/ENCAN976NRE/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF984NGC|/files/ENCFF984NGC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.821531. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF984NGC|/files/ENCFF984NGC/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.86. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978AJO|/files/ENCFF978AJO/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.798795. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978AJO|/files/ENCFF978AJO/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with a PBC1 value of 0.84. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR977LVI | float |
ATAC-seq_ENCSR977LVI |
ATAC-seq ENCSR977LVI [biosample_summary="Homo sapiens T-cell female adult (21 years)"]
|
 |
[1.25, 45.7] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 42691998 | 1.33% | 66663 |
| chr1 | 4284602 | 1.72% | 6623 |
| chr2 | 3221292 | 1.33% | 5257 |
| chr3 | 2374217 | 1.20% | 3831 |
| chr4 | 1557437 | 0.82% | 2457 |
| chr5 | 1958338 | 1.08% | 3138 |
| chr6 | 2554904 | 1.50% | 4013 |
| chr7 | 2116286 | 1.33% | 3346 |
| chr8 | 1587328 | 1.09% | 2534 |
| chr9 | 1649562 | 1.19% | 2580 |
| chr10 | 1932847 | 1.44% | 3095 |
| chr11 | 2127443 | 1.57% | 3249 |
| chr12 | 2164114 | 1.62% | 3341 |
| chr13 | 975019 | 0.85% | 1580 |
| chr14 | 1508297 | 1.41% | 2377 |
| chr15 | 1388440 | 1.36% | 2249 |
| chr16 | 1691463 | 1.87% | 2511 |
| chr17 | 2455406 | 2.95% | 3667 |
| chr18 | 714610 | 0.89% | 1177 |
| chr19 | 2304502 | 3.93% | 3276 |
| chr20 | 1152593 | 1.79% | 1814 |
| chr21 | 588137 | 1.26% | 900 |
| chr22 | 1037658 | 2.04% | 1582 |
| chrX | 1346791 | 0.86% | 2063 |
| chrY | 712 | <0.01% | 3 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 66663 | 150 | 3422 | 640.42 | 564 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF273DGN.bed.gz | 3.04 MB | 149ad318f7521936c22ba30db0318667 |
| ENCFF273DGN.tabix.bed.gz | 769.92 KB | 934d0476aa310dcffd2e7fb1285961b9 |
| ENCFF273DGN.tabix.bed.gz.tbi | 294.72 KB | 035fed42f4cc8ac74c78c90b0c990cf0 |
| genomic_resource.yaml | 3.7 KB | f08a42a5fb6aea0d683840c4ae827a24 |
| statistics/ |