Resource
| Id | ATAC-seq/ENCSR970UNF |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR970UNF [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN473PQP|/analyses/ENCAN473PQP/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF639AQK|/files/ENCFF639AQK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.882124. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF639AQK|/files/ENCFF639AQK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.90. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR970UNF | float |
ATAC-seq_ENCSR970UNF |
ATAC-seq ENCSR970UNF [biosample_summary="Homo sapiens colonic mucosa tissue female adult (41 years)"]
|
 |
[1.29, 39.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 97021155 | 3.02% | 167823 |
| chr1 | 9362884 | 3.76% | 15956 |
| chr2 | 7737215 | 3.19% | 13796 |
| chr3 | 5927514 | 2.99% | 10720 |
| chr4 | 4669415 | 2.45% | 8548 |
| chr5 | 4851034 | 2.67% | 8712 |
| chr6 | 5590659 | 3.27% | 9882 |
| chr7 | 4972990 | 3.12% | 8730 |
| chr8 | 4007994 | 2.76% | 7233 |
| chr9 | 4368528 | 3.16% | 7510 |
| chr10 | 4666076 | 3.49% | 8268 |
| chr11 | 4958488 | 3.67% | 8351 |
| chr12 | 4614664 | 3.46% | 8041 |
| chr13 | 2320909 | 2.03% | 4132 |
| chr14 | 3174822 | 2.97% | 5447 |
| chr15 | 3422060 | 3.36% | 5822 |
| chr16 | 3407593 | 3.77% | 5485 |
| chr17 | 4778520 | 5.74% | 7517 |
| chr18 | 2027986 | 2.52% | 3707 |
| chr19 | 3475223 | 5.93% | 5160 |
| chr20 | 2623743 | 4.07% | 4547 |
| chr21 | 1350739 | 2.89% | 2220 |
| chr22 | 2097835 | 4.13% | 3311 |
| chrX | 2611621 | 1.67% | 4716 |
| chrY | 2643 | <0.01% | 12 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 167823 | 150 | 4365 | 578.12 | 438 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF081FUV.bed.gz | 6.87 MB | 884eeaa7186cd3187ca61efe279dbbb2 |
| ENCFF081FUV.tabix.bed.gz | 1.85 MB | 73dd8c8cdea8f7b3cd3ee697e267cf5a |
| ENCFF081FUV.tabix.bed.gz.tbi | 489.78 KB | 38d4f7f1441c40393773712a6b9ab2c4 |
| genomic_resource.yaml | 2.58 KB | 1efb54bdde3ca40f57148b4e7ce5e437 |
| statistics/ |