Resource

Id ATAC-seq/ENCSR960KGOcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR960KGO [biosample_summary="Homo sapiens GM21515"]
Description
Labels
  • accession: ENCSR960KGO
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_EFO_0010838/
  • biosample_summary: Homo sapiens GM21515
  • date_created: 2020-11-24T22:02:40.163478+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR960KGO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR960KGO float

ATAC-seq_ENCSR960KGO
ATAC-seq ENCSR960KGO [biosample_summary="Homo sapiens GM21515"]
 HISTOGRAM FOR ATAC-seq_ENCSR960KGO [1.48, 37.7]
n
49,585,851
mean
6.25
sd
2.94

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 495858511.54% 91188
chr1 4534391 1.82% 8243
chr2 4303927 1.78% 8176
chr3 3515624 1.77% 6677
chr4 2767729 1.46% 5380
chr5 3005926 1.66% 5727
chr6 3335234 1.95% 6158
chr7 2739905 1.72% 5149
chr8 2450933 1.69% 4685
chr9 1971006 1.42% 3635
chr10 2359176 1.76% 4369
chr11 2419958 1.79% 4463
chr12 2482399 1.86% 4489
chr13 1310285 1.15% 2469
chr14 1472628 1.38% 2640
chr15 1408647 1.38% 2523
chr16 1433729 1.59% 2413
chr17 1739702 2.09% 2886
chr18 1105153 1.38% 2135
chr19 1461228 2.49% 2204
chr20 1058798 1.64% 1946
chr21 484041 1.04% 828
chr22 661422 1.30% 1078
chrX 1447344 0.93% 2671
chrY 116666 0.20% 244
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 91188 150 3071 543.78 444
global segment-length histogram

Files

Filename Size md5
ENCFF610VJM.bed.gz 3.63 MB a0b88c4762fab812b38e3562b4fde83f
ENCFF610VJM.tabix.bed.gz 1.01 MB 8c894927c34e366be2b9765308554a38
ENCFF610VJM.tabix.bed.gz.tbi 414.83 KB fc52417d985e6e103d18a018088fb394
genomic_resource.yaml 1.28 KB 71bb793eefd9ae7b38f988ca7ebde906
statistics/