Resource

Id ATAC-seq/ENCSR954BDAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR954BDA [biosample_summary="Homo sapiens GM21529"]
Description
Labels
  • accession: ENCSR954BDA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/cell_line_CLO_0014078/
  • biosample_summary: Homo sapiens GM21529
  • date_created: 2020-11-24T22:02:40.531969+00:00
  • date_released: 2021-02-11
  • doi: 10.17989/ENCSR954BDA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary:
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR954BDA float

ATAC-seq_ENCSR954BDA
ATAC-seq ENCSR954BDA [biosample_summary="Homo sapiens GM21529"]
 HISTOGRAM FOR ATAC-seq_ENCSR954BDA [1.39, 46.3]
n
61,613,564
mean
7.07
sd
3.66

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 616135641.92% 117640
chr1 5512979 2.21% 10404
chr2 5455013 2.25% 10629
chr3 4506025 2.27% 8876
chr4 3581226 1.88% 7118
chr5 3806686 2.10% 7473
chr6 4212673 2.47% 8093
chr7 3524727 2.21% 6852
chr8 3094736 2.13% 6054
chr9 2422140 1.75% 4626
chr10 2969665 2.22% 5693
chr11 2964956 2.19% 5618
chr12 3052091 2.29% 5826
chr13 1696841 1.48% 3306
chr14 1850601 1.73% 3453
chr15 1657864 1.63% 3107
chr16 1665622 1.84% 2946
chr17 1986068 2.39% 3462
chr18 1394003 1.73% 2785
chr19 1495891 2.55% 2382
chr20 1292431 2.01% 2451
chr21 573011 1.23% 1010
chr22 733616 1.44% 1277
chrX 2164022 1.39% 4197
chrY 677 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117640 150 3077 523.75 430
global segment-length histogram

Files

Filename Size md5
ENCFF425ZPR.bed.gz 4.38 MB 15d8220d56fbef7c6961c62f8b861b23
ENCFF425ZPR.tabix.bed.gz 1.27 MB 2dab66545ba4566079b96168ea785dd2
ENCFF425ZPR.tabix.bed.gz.tbi 482.62 KB 16fd5522fbb662e7a4089e3d26554636
genomic_resource.yaml 1.28 KB 82d80d7eff00015cb47b4e38ac06474a
statistics/