Resource
| Id | ATAC-seq/ENCSR948MQC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR948MQC [biosample_summary="Homo sapiens lower lobe of right lung tissue female adult (65 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (65 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN887UPQ|/analyses/ENCAN887UPQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN887UPQ|/analyses/ENCAN887UPQ/} has in progress subobject document {a625f412-7c53-4ae2-a930-80a944ebe16b|/documents/a625f412-7c53-4ae2-a930-80a944ebe16b/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF355BVL|/files/ENCFF355BVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.873796. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF355BVL|/files/ENCFF355BVL/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR948MQC | float |
ATAC-seq_ENCSR948MQC |
ATAC-seq ENCSR948MQC [biosample_summary="Homo sapiens lower lobe of right lung tissue female adult (65 years)"]
|
 |
[1.21, 27.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 88561725 | 2.75% | 146066 |
| chr1 | 8526186 | 3.42% | 13784 |
| chr2 | 6995851 | 2.89% | 11888 |
| chr3 | 5648033 | 2.85% | 9691 |
| chr4 | 3932862 | 2.07% | 6780 |
| chr5 | 4436883 | 2.44% | 7506 |
| chr6 | 5196606 | 3.04% | 8713 |
| chr7 | 4503497 | 2.83% | 7573 |
| chr8 | 3837408 | 2.64% | 6488 |
| chr9 | 3826366 | 2.76% | 6347 |
| chr10 | 4330382 | 3.24% | 7409 |
| chr11 | 4478573 | 3.32% | 7222 |
| chr12 | 4239594 | 3.18% | 6973 |
| chr13 | 2231108 | 1.95% | 3831 |
| chr14 | 2882322 | 2.69% | 4724 |
| chr15 | 2962924 | 2.91% | 4916 |
| chr16 | 3129384 | 3.46% | 4936 |
| chr17 | 4263320 | 5.12% | 6527 |
| chr18 | 1955683 | 2.43% | 3353 |
| chr19 | 3383225 | 5.77% | 4877 |
| chr20 | 2290344 | 3.55% | 3790 |
| chr21 | 1246158 | 2.67% | 1980 |
| chr22 | 1931545 | 3.80% | 2989 |
| chrX | 2331580 | 1.49% | 3761 |
| chrY | 1891 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 146066 | 150 | 4316 | 606.31 | 478 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF901RIY.bed.gz | 5.83 MB | 5b325084cafff9d91ebd920ee106fa6a |
| ENCFF901RIY.tabix.bed.gz | 1.6 MB | daac5d9b74e91b894b6645eba7017ec7 |
| ENCFF901RIY.tabix.bed.gz.tbi | 482.98 KB | c9057467851bd6ab183b315de96fe123 |
| genomic_resource.yaml | 2.83 KB | 955187fd22e98716b9c2e0b48455ba92 |
| statistics/ |