Resource

Id ATAC-seq/ENCSR946MAIcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR946MAI [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)"]
Description
Labels
  • accession: ENCSR946MAI
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_NTR_0000493/
  • biosample_summary: Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)
  • date_created: 2019-06-02T09:05:13.584214+00:00
  • date_released: 2022-06-08
  • doi: 10.17989/ENCSR946MAI
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (60 years)
  • status: released
  • submitter_comment: This dataset has been released as part of a larger biosample and assay collection, despite noncompliance with ENCODE quality standards, due to lack of sample material to reattempt the assay.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR946MAI float

ATAC-seq_ENCSR946MAI
ATAC-seq ENCSR946MAI [biosample_summary="Homo sapiens left ventricle myocardium inferior tissue male adult (60 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR946MAI [1.8, 30.4]
n
32,329,953
mean
7.53
sd
3.34

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 323299531.00% 70518
chr1 3209723 1.29% 6933
chr2 2541737 1.05% 5643
chr3 2099035 1.06% 4653
chr4 1334034 0.70% 2974
chr5 1736367 0.96% 3861
chr6 1779472 1.04% 3888
chr7 1604712 1.01% 3567
chr8 1372807 0.95% 3025
chr9 1406143 1.02% 3040
chr10 1610853 1.20% 3576
chr11 1711072 1.27% 3736
chr12 1548984 1.16% 3377
chr13 785232 0.69% 1756
chr14 965855 0.90% 2088
chr15 1184392 1.16% 2621
chr16 1211260 1.34% 2599
chr17 1572988 1.89% 3313
chr18 668635 0.83% 1541
chr19 1327594 2.26% 2575
chr20 858905 1.33% 1891
chr21 380262 0.81% 838
chr22 719524 1.42% 1566
chrX 662091 0.42% 1369
chrY 38276 0.07% 88
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 70518 150 2059 458.46 390
global segment-length histogram

Files

Filename Size md5
ENCFF199BCX.bed.gz 2.29 MB 4f9f30eb4f62212130a0cceef373de45
ENCFF199BCX.tabix.bed.gz 787.32 KB e74a15df11ee795531cb03f1286c0c1b
ENCFF199BCX.tabix.bed.gz.tbi 345.57 KB 73edf3d3009f040ec02001e5e6db81df
genomic_resource.yaml 2.59 KB fb613146bd11840dced22edea34c3b9a
statistics/