Resource

Id ATAC-seq/ENCSR940QJUcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR940QJU [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
Description
Labels
  • accession: ENCSR940QJU
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with lipopolysaccharide
  • date_created: 2016-10-12T15:51:40.227576+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR940QJU
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with lipopolysaccharide
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR940QJU float

ATAC-seq_ENCSR940QJU
ATAC-seq ENCSR940QJU [biosample_summary="Homo sapiens dendritic cell treated with lipopolysaccharide"]
 HISTOGRAM FOR ATAC-seq_ENCSR940QJU [2.24, 31.8]
n
26,078,832
mean
7.76
sd
3.76

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 260788320.81% 69157
chr1 2224975 0.89% 5826
chr2 2193378 0.91% 5916
chr3 1799332 0.91% 4793
chr4 1421600 0.75% 3901
chr5 1509164 0.83% 4110
chr6 1650190 0.97% 4394
chr7 1452713 0.91% 3813
chr8 1346352 0.93% 3648
chr9 1057110 0.76% 2788
chr10 1276240 0.95% 3454
chr11 1276727 0.95% 3372
chr12 1302780 0.98% 3437
chr13 707656 0.62% 1915
chr14 832072 0.78% 2159
chr15 746790 0.73% 1989
chr16 804940 0.89% 2069
chr17 871437 1.05% 2203
chr18 652768 0.81% 1775
chr19 848802 1.45% 1947
chr20 632743 0.98% 1699
chr21 297571 0.64% 787
chr22 337384 0.66% 875
chrX 835363 0.54% 2284
chrY 745 <0.01% 3
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 69157 150 1948 377.1 324
global segment-length histogram

Files

Filename Size md5
ENCFF182JAP.bed.gz 1.85 MB d41519cf19dfe1564f21a375943be30b
ENCFF182JAP.tabix.bed.gz 727.11 KB 9bb2a97274ad846d41957d68335ac28f
ENCFF182JAP.tabix.bed.gz.tbi 386.51 KB 88d7902e6200ec0b4121aa2831ac22d9
genomic_resource.yaml 1.46 KB 5d38c0fe3a81ee3a3e1739520cac5371
statistics/