Resource

Id ATAC-seq/ENCSR926TFYcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR926TFY [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
Description
Labels
  • accession: ENCSR926TFY
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours
  • date_created: 2016-10-12T01:54:11.787705+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR926TFY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 4 hours
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR926TFY float

ATAC-seq_ENCSR926TFY
ATAC-seq ENCSR926TFY [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 4 hours"]
 HISTOGRAM FOR ATAC-seq_ENCSR926TFY [1.49, 36.6]
n
49,027,596
mean
8.17
sd
4.31

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 490275961.52% 121359
chr1 4526570 1.82% 11153
chr2 4100758 1.69% 10261
chr3 3311405 1.67% 8287
chr4 2391629 1.26% 6022
chr5 2696227 1.49% 6780
chr6 2996857 1.75% 7449
chr7 2638756 1.66% 6497
chr8 2394531 1.65% 6022
chr9 2065302 1.49% 5166
chr10 2368821 1.77% 5983
chr11 2399827 1.78% 5932
chr12 2442841 1.83% 6069
chr13 1210284 1.06% 3029
chr14 1538785 1.44% 3789
chr15 1513776 1.48% 3803
chr16 1553438 1.72% 3668
chr17 2009457 2.41% 4814
chr18 1101229 1.37% 2787
chr19 1655881 2.82% 3678
chr20 1265064 1.96% 3128
chr21 614925 1.32% 1488
chr22 769341 1.51% 1834
chrX 1460888 0.94% 3716
chrY 1004 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 121359 150 2155 403.99 338
global segment-length histogram

Files

Filename Size md5
ENCFF368UYH.bed.gz 3.72 MB 6ee7e61595123fbe8b5a034b628bfd70
ENCFF368UYH.tabix.bed.gz 1.29 MB cb54a42344d5db5f549b3a7bf3cd5fed
ENCFF368UYH.tabix.bed.gz.tbi 469.36 KB beaa8daecd8d893536a620be83ebcc15
genomic_resource.yaml 1.58 KB b06a76d202e6a2d26e464e6a5e2501d6
statistics/