Resource

Id ATAC-seq/ENCSR913FZQcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR913FZQ [biosample_summary="Homo sapiens posterior vena cava tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR913FZQ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001072/
  • biosample_summary: Homo sapiens posterior vena cava tissue female child (16 years)
  • date_created: 2019-05-25T07:40:36.209324+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR913FZQ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR913FZQ float

ATAC-seq_ENCSR913FZQ
ATAC-seq ENCSR913FZQ [biosample_summary="Homo sapiens posterior vena cava tissue female child (16 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR913FZQ [1.37, 29.2]
n
40,497,176
mean
3.87
sd
1.92

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 404971761.26% 78919
chr1 3818199 1.53% 7199
chr2 3153645 1.30% 6355
chr3 2489054 1.26% 4934
chr4 1684943 0.89% 3471
chr5 2070033 1.14% 4174
chr6 2261643 1.32% 4414
chr7 2081027 1.31% 4229
chr8 1712200 1.18% 3487
chr9 1818830 1.31% 3547
chr10 1957368 1.46% 3882
chr11 2080385 1.54% 3874
chr12 1936811 1.45% 3723
chr13 995297 0.87% 2017
chr14 1262368 1.18% 2459
chr15 1369864 1.34% 2666
chr16 1502367 1.66% 2796
chr17 2045472 2.46% 3767
chr18 810568 1.01% 1703
chr19 1810105 3.09% 3130
chr20 1126377 1.75% 2227
chr21 563232 1.21% 1105
chr22 898970 1.77% 1723
chrX 1045638 0.67% 2027
chrY 2780 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 78919 150 2842 513.15 412
global segment-length histogram

Files

Filename Size md5
ENCFF620RPB.bed.gz 2.91 MB 8f4ad082d14d9b2e5812edd88e42c1ac
ENCFF620RPB.tabix.bed.gz 880.78 KB cdf269ce71f56d5ef6c0536c4516ba66
ENCFF620RPB.tabix.bed.gz.tbi 393.18 KB 032f008b07fc547707ad8db502fe406f
genomic_resource.yaml 2.75 KB 1b0d08154a17df0204df776cefe0d96e
statistics/