Resource
| Id | ATAC-seq/ENCSR905PWV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR905PWV [biosample_summary="Homo sapiens HG02610"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN233FCQ|/analyses/ENCAN233FCQ/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF230HVR|/files/ENCFF230HVR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.732417. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF230HVR|/files/ENCFF230HVR/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.72. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR905PWV | float |
ATAC-seq_ENCSR905PWV |
ATAC-seq ENCSR905PWV [biosample_summary="Homo sapiens HG02610"]
|
 |
[1.41, 39.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 64424089 | 2.00% | 127218 |
| chr1 | 5679138 | 2.28% | 10969 |
| chr2 | 5679264 | 2.34% | 11383 |
| chr3 | 4708699 | 2.37% | 9548 |
| chr4 | 4053108 | 2.13% | 8222 |
| chr5 | 4039663 | 2.23% | 8128 |
| chr6 | 4478982 | 2.62% | 8885 |
| chr7 | 3652755 | 2.29% | 7245 |
| chr8 | 3254903 | 2.24% | 6608 |
| chr9 | 2563570 | 1.85% | 5089 |
| chr10 | 3019427 | 2.26% | 5926 |
| chr11 | 2914210 | 2.16% | 5671 |
| chr12 | 3181302 | 2.39% | 6214 |
| chr13 | 2017061 | 1.76% | 4149 |
| chr14 | 1948612 | 1.82% | 3803 |
| chr15 | 1790584 | 1.76% | 3520 |
| chr16 | 1685803 | 1.87% | 3170 |
| chr17 | 2014819 | 2.42% | 3758 |
| chr18 | 1564134 | 1.95% | 3230 |
| chr19 | 1506611 | 2.57% | 2570 |
| chr20 | 1262126 | 1.96% | 2503 |
| chr21 | 607278 | 1.30% | 1162 |
| chr22 | 733748 | 1.44% | 1340 |
| chrX | 1892281 | 1.21% | 3737 |
| chrY | 176011 | 0.31% | 388 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 127218 | 150 | 2595 | 506.41 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF095HRI.bed.gz | 4.63 MB | f09e8fb60519300ce17c418bfca3afcb |
| ENCFF095HRI.tabix.bed.gz | 1.38 MB | ffa1dbabe777e7b0a4fff92abe824eb5 |
| ENCFF095HRI.tabix.bed.gz.tbi | 508.19 KB | 50f36dea9c0387d5cdced3121943d8d0 |
| genomic_resource.yaml | 2.49 KB | e32817a5fe5dabacb264785386ff79f8 |
| statistics/ |