Resource
| Id | ATAC-seq/ENCSR902CFR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR902CFR [biosample_summary="Homo sapiens GM21423"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN433HIN|/analyses/ENCAN433HIN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF751SRZ|/files/ENCFF751SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.876147. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF751SRZ|/files/ENCFF751SRZ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR902CFR | float |
ATAC-seq_ENCSR902CFR |
ATAC-seq ENCSR902CFR [biosample_summary="Homo sapiens GM21423"]
|
 |
[1.43, 41.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 55143503 | 1.71% | 107773 |
| chr1 | 5007998 | 2.01% | 9627 |
| chr2 | 4715733 | 1.95% | 9500 |
| chr3 | 3818963 | 1.93% | 7677 |
| chr4 | 3193973 | 1.68% | 6605 |
| chr5 | 3339144 | 1.84% | 6718 |
| chr6 | 3707489 | 2.17% | 7267 |
| chr7 | 3050274 | 1.91% | 6077 |
| chr8 | 2720667 | 1.87% | 5516 |
| chr9 | 2231468 | 1.61% | 4362 |
| chr10 | 2673768 | 2.00% | 5269 |
| chr11 | 2625502 | 1.94% | 5082 |
| chr12 | 2710251 | 2.03% | 5236 |
| chr13 | 1507330 | 1.32% | 3043 |
| chr14 | 1704960 | 1.59% | 3240 |
| chr15 | 1641799 | 1.61% | 3148 |
| chr16 | 1571406 | 1.74% | 2836 |
| chr17 | 1946729 | 2.34% | 3482 |
| chr18 | 1270504 | 1.58% | 2633 |
| chr19 | 1529045 | 2.61% | 2463 |
| chr20 | 1183041 | 1.84% | 2314 |
| chr21 | 526174 | 1.13% | 979 |
| chr22 | 724919 | 1.43% | 1273 |
| chrX | 1632893 | 1.05% | 3187 |
| chrY | 109473 | 0.19% | 239 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 107773 | 150 | 2875 | 511.66 | 418 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF637TQK.bed.gz | 3.94 MB | 84c7d70005808599bfd2308e804c60ca |
| ENCFF637TQK.tabix.bed.gz | 1.17 MB | 5a9d09181dbb6ce75931fd554b52d758 |
| ENCFF637TQK.tabix.bed.gz.tbi | 458.66 KB | cbff38a0953b47f409dc0f30d54e8f80 |
| genomic_resource.yaml | 2.49 KB | bbca152382ceeaf4be04d624c66054bc |
| statistics/ |