Resource
| Id | ATAC-seq/ENCSR899YEP |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR899YEP [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: male adult (61 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN226HIW|/analyses/ENCAN226HIW/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF771XJN|/files/ENCFF771XJN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.81783. audit_warning: According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have either >150k reproducible peaks in an overlap peaks file, or >70k in an IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable, and <100k or <50k respectively is not compliant. File(s) {ENCFF308AVB|/files/ENCFF308AVB/} (overlap peaks) and {ENCFF291YRH|/files/ENCFF291YRH/} (IDR thresholded peaks) processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 125472 and 58375 peaks. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR899YEP | float |
ATAC-seq_ENCSR899YEP |
ATAC-seq ENCSR899YEP [biosample_summary="Homo sapiens heart left ventricle tissue male adult (61 years)"]
|
 |
[1.56, 34.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 41228759 | 1.28% | 88833 |
| chr1 | 4119939 | 1.65% | 8852 |
| chr2 | 3237239 | 1.34% | 7077 |
| chr3 | 2719845 | 1.37% | 5927 |
| chr4 | 1762829 | 0.93% | 3963 |
| chr5 | 2213941 | 1.22% | 4899 |
| chr6 | 2340990 | 1.37% | 5081 |
| chr7 | 2030176 | 1.27% | 4468 |
| chr8 | 1797309 | 1.24% | 3945 |
| chr9 | 1770254 | 1.28% | 3792 |
| chr10 | 2053948 | 1.54% | 4489 |
| chr11 | 2131412 | 1.58% | 4495 |
| chr12 | 1980801 | 1.49% | 4236 |
| chr13 | 1018343 | 0.89% | 2247 |
| chr14 | 1222295 | 1.14% | 2632 |
| chr15 | 1505940 | 1.48% | 3246 |
| chr16 | 1468004 | 1.63% | 3104 |
| chr17 | 1941122 | 2.33% | 4050 |
| chr18 | 874157 | 1.09% | 1991 |
| chr19 | 1609748 | 2.75% | 3034 |
| chr20 | 1092356 | 1.70% | 2368 |
| chr21 | 491000 | 1.05% | 1053 |
| chr22 | 933663 | 1.84% | 1990 |
| chrX | 866350 | 0.56% | 1792 |
| chrY | 47098 | 0.08% | 102 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 88833 | 150 | 2489 | 464.12 | 388 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF308AVB.bed.gz | 3.11 MB | 3e76e5380b8bef8c9f4c24cb80dd1747 |
| ENCFF308AVB.tabix.bed.gz | 997.68 KB | 4c097c0ab59405da4eb01e22b246abd1 |
| ENCFF308AVB.tabix.bed.gz.tbi | 386.79 KB | b351f863a8a67c9126f3e11b2b790144 |
| genomic_resource.yaml | 2.5 KB | e0c6c9e778fac40dddf408b1204491a5 |
| statistics/ |