Resource

Id ATAC-seq/ENCSR890DWHcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR890DWH [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR890DWH
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female adult (41 years)
  • date_created: 2019-05-25T06:07:04.063326+00:00
  • date_released: 2020-08-20
  • doi: 10.17989/ENCSR890DWH
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR890DWH float

ATAC-seq_ENCSR890DWH
ATAC-seq ENCSR890DWH [biosample_summary="Homo sapiens psoas muscle tissue female adult (41 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR890DWH [1.23, 29]
n
53,419,254
mean
5.97
sd
3.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 534192541.66% 100820
chr1 5344395 2.15% 10019
chr2 4364969 1.80% 8446
chr3 3503863 1.77% 6850
chr4 2060321 1.08% 4073
chr5 2670421 1.47% 5211
chr6 3103118 1.82% 6029
chr7 2695508 1.69% 5153
chr8 2150191 1.48% 4150
chr9 2341132 1.69% 4424
chr10 2662419 1.99% 5205
chr11 2764698 2.05% 5090
chr12 2413262 1.81% 4502
chr13 1102017 0.96% 2133
chr14 1691277 1.58% 3155
chr15 1910880 1.87% 3612
chr16 2075577 2.30% 3714
chr17 2769506 3.33% 4879
chr18 1035191 1.29% 2080
chr19 2075493 3.54% 3499
chr20 1420194 2.20% 2671
chr21 683254 1.46% 1260
chr22 1278508 2.52% 2245
chrX 1301030 0.83% 2412
chrY 2030 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 100820 150 3003 529.85 416
global segment-length histogram

Files

Filename Size md5
ENCFF615ZFR.bed.gz 4.01 MB c65ad819e889006e4574a203778b8c91
ENCFF615ZFR.tabix.bed.gz 1.11 MB f61ce5ebe62f414dc096b795d6089a9a
ENCFF615ZFR.tabix.bed.gz.tbi 374.69 KB 12a73cc36e488ce1bae9e351f787773b
genomic_resource.yaml 1.63 KB 83d4307623990f4b4afd2bb1cf730d71
statistics/