Resource

Id ATAC-seq/ENCSR886VCCcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR886VCC [biosample_summary="Homo sapiens psoas muscle tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR886VCC
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008450/
  • biosample_summary: Homo sapiens psoas muscle tissue female adult (47 years)
  • date_created: 2019-05-29T09:52:38.578666+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR886VCC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR886VCC float

ATAC-seq_ENCSR886VCC
ATAC-seq ENCSR886VCC [biosample_summary="Homo sapiens psoas muscle tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR886VCC [1.16, 35.9]
n
67,305,017
mean
5.74
sd
3.22

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 673050172.09% 117750
chr1 6753834 2.71% 11631
chr2 5510406 2.28% 9889
chr3 4419577 2.23% 8021
chr4 2605858 1.37% 4833
chr5 3404492 1.88% 6179
chr6 3853461 2.26% 7017
chr7 3376997 2.12% 6008
chr8 2689116 1.85% 4828
chr9 2915125 2.11% 5110
chr10 3399556 2.54% 6169
chr11 3434179 2.54% 5851
chr12 3008724 2.26% 5201
chr13 1465062 1.28% 2673
chr14 2115687 1.98% 3663
chr15 2473600 2.43% 4302
chr16 2607913 2.89% 4258
chr17 3487260 4.19% 5678
chr18 1290783 1.61% 2391
chr19 2490257 4.25% 3777
chr20 1822991 2.83% 3197
chr21 868135 1.86% 1498
chr22 1680056 3.31% 2743
chrX 1631717 1.05% 2832
chrY 231 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 117750 150 3431 571.59 452
global segment-length histogram

Files

Filename Size md5
ENCFF237XET.bed.gz 4.96 MB bc483f25344942a686494ac3844a7710
ENCFF237XET.tabix.bed.gz 1.31 MB 1106487655d037ef4e666cf6ac5a3837
ENCFF237XET.tabix.bed.gz.tbi 391.05 KB 1a517f78680d121a26244ef6429f8973
genomic_resource.yaml 1.63 KB d469496b6d2aaed130d92c528333b34e
statistics/