Resource

Id ATAC-seq/ENCSR872MAOcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR872MAO [biosample_summary="Homo sapiens ovary tissue female adult (41 years)"]
Description
Labels
  • accession: ENCSR872MAO
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000992/
  • biosample_summary: Homo sapiens ovary tissue female adult (41 years)
  • date_created: 2019-07-30T07:10:38.716849+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR872MAO
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (41 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR872MAO float

ATAC-seq_ENCSR872MAO
ATAC-seq ENCSR872MAO [biosample_summary="Homo sapiens ovary tissue female adult (41 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR872MAO [1.7, 29.1]
n
31,524,976
mean
5.39
sd
2.2

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 315249760.98% 50808
chr1 3093576 1.24% 4936
chr2 2408629 0.99% 3983
chr3 1923286 0.97% 3148
chr4 1364843 0.72% 2246
chr5 1566370 0.86% 2567
chr6 1852758 1.08% 2995
chr7 1623043 1.02% 2640
chr8 1351323 0.93% 2284
chr9 1382984 1.00% 2255
chr10 1462769 1.09% 2418
chr11 1682086 1.25% 2725
chr12 1555789 1.17% 2474
chr13 696908 0.61% 1151
chr14 999158 0.93% 1590
chr15 1018896 1.00% 1624
chr16 1141680 1.26% 1786
chr17 1576374 1.89% 2420
chr18 630493 0.78% 1056
chr19 1497703 2.56% 2205
chr20 798356 1.24% 1339
chr21 381229 0.82% 624
chr22 659892 1.30% 1042
chrX 856584 0.55% 1299
chrY 247 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 50808 150 2955 620.47 505
global segment-length histogram

Files

Filename Size md5
ENCFF586QDS.bed.gz 2.21 MB 219df09f38c89909be246cf7c8b0286a
ENCFF586QDS.tabix.bed.gz 586.26 KB 9608687108ba0b80d89de88953f3460a
ENCFF586QDS.tabix.bed.gz.tbi 287.59 KB 4eaf202a92e90963ee69773a8f4029d4
genomic_resource.yaml 2.71 KB fc2379bd3747cdb7a3f721151b8b9862
statistics/