Resource
| Id | ATAC-seq/ENCSR864ADD |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR864ADD [biosample_summary="Homo sapiens adrenal gland tissue female adult (41 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (41 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN371EHF|/analyses/ENCAN371EHF/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN371EHF|/analyses/ENCAN371EHF/} has in progress subobject document {9fc1813d-ccb0-49d6-88b1-ade27cb3237a|/documents/9fc1813d-ccb0-49d6-88b1-ade27cb3237a/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF308ZMK|/files/ENCFF308ZMK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.883049. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF308ZMK|/files/ENCFF308ZMK/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR864ADD | float |
ATAC-seq_ENCSR864ADD |
ATAC-seq ENCSR864ADD [biosample_summary="Homo sapiens adrenal gland tissue female adult (41 years)"]
|
 |
[1.18, 39.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 77668578 | 2.41% | 139868 |
| chr1 | 7533512 | 3.03% | 13446 |
| chr2 | 6155086 | 2.54% | 11342 |
| chr3 | 4956376 | 2.50% | 9218 |
| chr4 | 3234118 | 1.70% | 6173 |
| chr5 | 4042185 | 2.23% | 7605 |
| chr6 | 4294400 | 2.51% | 7831 |
| chr7 | 4030873 | 2.53% | 7344 |
| chr8 | 3396434 | 2.34% | 6263 |
| chr9 | 3429475 | 2.48% | 6169 |
| chr10 | 3818211 | 2.85% | 7094 |
| chr11 | 3974831 | 2.94% | 7056 |
| chr12 | 3836418 | 2.88% | 6822 |
| chr13 | 1847504 | 1.62% | 3441 |
| chr14 | 2438682 | 2.28% | 4399 |
| chr15 | 2582581 | 2.53% | 4648 |
| chr16 | 2750580 | 3.04% | 4686 |
| chr17 | 3781333 | 4.54% | 6336 |
| chr18 | 1636089 | 2.04% | 3085 |
| chr19 | 3013064 | 5.14% | 4701 |
| chr20 | 2151204 | 3.34% | 3896 |
| chr21 | 975015 | 2.09% | 1734 |
| chr22 | 1756911 | 3.46% | 2925 |
| chrX | 2033442 | 1.30% | 3653 |
| chrY | 254 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 139868 | 150 | 3465 | 555.3 | 426 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF590JRI.bed.gz | 5.58 MB | e86246136cafd4f97e52ca22c6b405e1 |
| ENCFF590JRI.tabix.bed.gz | 1.52 MB | 9ee2d031b7ac25f588de2415183a58af |
| ENCFF590JRI.tabix.bed.gz.tbi | 483.01 KB | f493532582102f216274777bc47ffac8 |
| genomic_resource.yaml | 2.79 KB | e84d2cf9cb3e0b7b4afe6edcb68da6f3 |
| statistics/ |