Resource
| Id | ATAC-seq/ENCSR846VPV |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR846VPV [biosample_summary="Homo sapiens heart left ventricle tissue female adult (66 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (66 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN380SYM|/analyses/ENCAN380SYM/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN380SYM|/analyses/ENCAN380SYM/} has in progress subobject document {1ffc1b32-5e74-41f8-9011-363a45567cd6|/documents/1ffc1b32-5e74-41f8-9011-363a45567cd6/} audit_not_compliant: Alignment file {ENCFF456PVX|/files/ENCFF456PVX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 17070881 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF456PVX|/files/ENCFF456PVX/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR846VPV | float |
ATAC-seq_ENCSR846VPV |
ATAC-seq ENCSR846VPV [biosample_summary="Homo sapiens heart left ventricle tissue female adult (66 years)"]
|
 |
[1.6, 38.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52672522 | 1.64% | 104736 |
| chr1 | 5068064 | 2.04% | 9951 |
| chr2 | 4200283 | 1.73% | 8549 |
| chr3 | 3428700 | 1.73% | 6983 |
| chr4 | 2363024 | 1.24% | 4865 |
| chr5 | 2928885 | 1.61% | 5989 |
| chr6 | 3102985 | 1.82% | 6222 |
| chr7 | 2640976 | 1.66% | 5375 |
| chr8 | 2353465 | 1.62% | 4813 |
| chr9 | 2223322 | 1.61% | 4417 |
| chr10 | 2659053 | 1.99% | 5355 |
| chr11 | 2733117 | 2.02% | 5378 |
| chr12 | 2566054 | 1.93% | 5022 |
| chr13 | 1352622 | 1.18% | 2744 |
| chr14 | 1580644 | 1.48% | 3107 |
| chr15 | 1843748 | 1.81% | 3646 |
| chr16 | 1812253 | 2.01% | 3495 |
| chr17 | 2420625 | 2.91% | 4570 |
| chr18 | 1153804 | 1.44% | 2400 |
| chr19 | 1874707 | 3.20% | 3304 |
| chr20 | 1376402 | 2.14% | 2811 |
| chr21 | 642669 | 1.38% | 1263 |
| chr22 | 1078961 | 2.12% | 2081 |
| chrX | 1267935 | 0.81% | 2395 |
| chrY | 224 | <0.01% | 1 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 104736 | 150 | 2864 | 502.91 | 411 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF085ASE.bed.gz | 3.77 MB | 44fec0fcb22c81941c2dcda4a6ffd139 |
| ENCFF085ASE.tabix.bed.gz | 1.14 MB | 528ffbd4838ff23df8ede9b82ffd97b2 |
| ENCFF085ASE.tabix.bed.gz.tbi | 431.93 KB | 0ecac038efdd81352c75b8b40a485904 |
| genomic_resource.yaml | 2.54 KB | 1854b78b533c239bf15c997840182acf |
| statistics/ |