Resource
| Id | ATAC-seq/ENCSR839UOB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR839UOB [biosample_summary="Homo sapiens HG03432"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN282PDK|/analyses/ENCAN282PDK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF170VVQ|/files/ENCFF170VVQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.884079. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF170VVQ|/files/ENCFF170VVQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.89. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR839UOB | float |
ATAC-seq_ENCSR839UOB |
ATAC-seq ENCSR839UOB [biosample_summary="Homo sapiens HG03432"]
|
 |
[1.37, 46.2] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 75388183 | 2.34% | 137227 |
| chr1 | 6537382 | 2.63% | 11585 |
| chr2 | 6816509 | 2.81% | 12694 |
| chr3 | 5580909 | 2.81% | 10539 |
| chr4 | 5154563 | 2.71% | 9902 |
| chr5 | 4809657 | 2.65% | 9051 |
| chr6 | 5205919 | 3.05% | 9612 |
| chr7 | 4359208 | 2.74% | 8054 |
| chr8 | 3920031 | 2.70% | 7405 |
| chr9 | 2949479 | 2.13% | 5370 |
| chr10 | 3614143 | 2.70% | 6620 |
| chr11 | 3470303 | 2.57% | 6183 |
| chr12 | 3604854 | 2.70% | 6532 |
| chr13 | 2324050 | 2.03% | 4395 |
| chr14 | 2182724 | 2.04% | 3864 |
| chr15 | 1906859 | 1.87% | 3368 |
| chr16 | 1861245 | 2.06% | 3091 |
| chr17 | 2146082 | 2.58% | 3476 |
| chr18 | 1808895 | 2.25% | 3420 |
| chr19 | 1662887 | 2.84% | 2384 |
| chr20 | 1478180 | 2.29% | 2609 |
| chr21 | 748459 | 1.60% | 1316 |
| chr22 | 812112 | 1.60% | 1251 |
| chrX | 2244320 | 1.44% | 4106 |
| chrY | 189413 | 0.33% | 400 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 137227 | 150 | 3242 | 549.37 | 452 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF831FGS.bed.gz | 5.27 MB | 6a87c7891d971da468a58910bfa24def |
| ENCFF831FGS.tabix.bed.gz | 1.49 MB | 18b8a7e259fbc87bcc650013e6c6aeb1 |
| ENCFF831FGS.tabix.bed.gz.tbi | 539.95 KB | ab5dd2fd52c3c759ab5f6d63a7b3c655 |
| genomic_resource.yaml | 2.49 KB | ddc359505a3f74c1a35c937133749577 |
| statistics/ |