Resource

Id ATAC-seq/ENCSR836FILcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR836FIL [biosample_summary="Homo sapiens right lobe of liver tissue male adult (40 years)"]
Description
Labels
  • accession: ENCSR836FIL
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001114/
  • biosample_summary: Homo sapiens right lobe of liver tissue male adult (40 years)
  • date_created: 2019-06-02T08:15:50.483415+00:00
  • date_released: 2020-08-17
  • doi: 10.17989/ENCSR836FIL
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (40 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR836FIL float

ATAC-seq_ENCSR836FIL
ATAC-seq ENCSR836FIL [biosample_summary="Homo sapiens right lobe of liver tissue male adult (40 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR836FIL [1.18, 39]
n
91,611,329
mean
5.61
sd
3.39

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 916113292.85% 152584
chr1 8672656 3.48% 14219
chr2 7309692 3.02% 12331
chr3 5842775 2.95% 10020
chr4 4149220 2.18% 7227
chr5 4666150 2.57% 8061
chr6 5271855 3.09% 8843
chr7 4872046 3.06% 8136
chr8 4014543 2.77% 6931
chr9 4013125 2.90% 6619
chr10 4611130 3.45% 7776
chr11 4654860 3.45% 7634
chr12 4554192 3.42% 7587
chr13 2317963 2.03% 3884
chr14 2979573 2.78% 4886
chr15 2976028 2.92% 4950
chr16 3358618 3.72% 5311
chr17 4084101 4.91% 6412
chr18 2011042 2.50% 3472
chr19 3230103 5.51% 4838
chr20 2409857 3.74% 4036
chr21 1250860 2.68% 2033
chr22 2077016 4.09% 3238
chrX 2105406 1.35% 3787
chrY 178518 0.31% 353
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 152584 150 3715 600.4 492
global segment-length histogram

Files

Filename Size md5
ENCFF475FZB.bed.gz 6.11 MB 5435aef23897cd159c9e2a215bc15e14
ENCFF475FZB.tabix.bed.gz 1.68 MB 5b7c4a62ba6e24c8bc1bcb43cdcbaa85
ENCFF475FZB.tabix.bed.gz.tbi 490.18 KB df753fef6234c054e572e738df547f44
genomic_resource.yaml 1.64 KB bf3fa18c18a6d740ec42314acd2b2b86
statistics/