Resource
| Id | ATAC-seq/ENCSR835WBW |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR835WBW [biosample_summary="Homo sapiens HG03565"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN715JBI|/analyses/ENCAN715JBI/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF220BRO|/files/ENCFF220BRO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.832409. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF220BRO|/files/ENCFF220BRO/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.87. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR835WBW | float |
ATAC-seq_ENCSR835WBW |
ATAC-seq ENCSR835WBW [biosample_summary="Homo sapiens HG03565"]
|
 |
[1.64, 46.4] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 52316323 | 1.63% | 109300 |
| chr1 | 4592112 | 1.84% | 9421 |
| chr2 | 4596011 | 1.90% | 9829 |
| chr3 | 3823377 | 1.93% | 8163 |
| chr4 | 3232760 | 1.70% | 7049 |
| chr5 | 3275723 | 1.80% | 7018 |
| chr6 | 3536154 | 2.07% | 7424 |
| chr7 | 2964816 | 1.86% | 6262 |
| chr8 | 2702307 | 1.86% | 5822 |
| chr9 | 2054237 | 1.48% | 4305 |
| chr10 | 2496995 | 1.87% | 5251 |
| chr11 | 2478413 | 1.83% | 5172 |
| chr12 | 2562160 | 1.92% | 5308 |
| chr13 | 1535406 | 1.34% | 3296 |
| chr14 | 1550745 | 1.45% | 3186 |
| chr15 | 1417664 | 1.39% | 2917 |
| chr16 | 1390124 | 1.54% | 2707 |
| chr17 | 1628631 | 1.96% | 3089 |
| chr18 | 1289766 | 1.60% | 2826 |
| chr19 | 1323308 | 2.26% | 2305 |
| chr20 | 1071554 | 1.66% | 2221 |
| chr21 | 529440 | 1.13% | 1042 |
| chr22 | 608317 | 1.20% | 1119 |
| chrX | 1524321 | 0.98% | 3268 |
| chrY | 131982 | 0.23% | 300 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 109300 | 150 | 2885 | 478.65 | 408 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF557QED.bed.gz | 3.66 MB | dd53f18a88f283987cd5febc8d50b4aa |
| ENCFF557QED.tabix.bed.gz | 1.18 MB | 946ad87a22103c0658044e85441fea08 |
| ENCFF557QED.tabix.bed.gz.tbi | 479.63 KB | a587f8d2f5f928be00e63508b48dc939 |
| genomic_resource.yaml | 2.49 KB | a8d48e968163b67300a1d0a46739128b |
| statistics/ |