Resource
| Id | ATAC-seq/ENCSR821QHC |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR821QHC [biosample_summary="Homo sapiens HG02642"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN641XJK|/analyses/ENCAN641XJK/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF705PBQ|/files/ENCFF705PBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.689098. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF705PBQ|/files/ENCFF705PBQ/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.71. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR821QHC | float |
ATAC-seq_ENCSR821QHC |
ATAC-seq ENCSR821QHC [biosample_summary="Homo sapiens HG02642"]
|
 |
[1.27, 41.5] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 57263164 | 1.78% | 98653 |
| chr1 | 5081904 | 2.04% | 8579 |
| chr2 | 4944754 | 2.04% | 8790 |
| chr3 | 3996164 | 2.02% | 7132 |
| chr4 | 3349654 | 1.76% | 6094 |
| chr5 | 3456746 | 1.90% | 6144 |
| chr6 | 3850066 | 2.25% | 6684 |
| chr7 | 3208929 | 2.01% | 5674 |
| chr8 | 2818142 | 1.94% | 5065 |
| chr9 | 2247461 | 1.62% | 3887 |
| chr10 | 2728131 | 2.04% | 4733 |
| chr11 | 2729621 | 2.02% | 4651 |
| chr12 | 2833626 | 2.13% | 4822 |
| chr13 | 1550455 | 1.36% | 2763 |
| chr14 | 1798748 | 1.68% | 3020 |
| chr15 | 1645392 | 1.61% | 2769 |
| chr16 | 1613691 | 1.79% | 2537 |
| chr17 | 2029866 | 2.44% | 3130 |
| chr18 | 1307739 | 1.63% | 2370 |
| chr19 | 1668211 | 2.85% | 2406 |
| chr20 | 1215440 | 1.89% | 2082 |
| chr21 | 598341 | 1.28% | 996 |
| chr22 | 802721 | 1.58% | 1200 |
| chrX | 1656301 | 1.06% | 2872 |
| chrY | 131061 | 0.23% | 253 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 98653 | 150 | 2960 | 580.45 | 480 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF731ZCZ.bed.gz | 4.03 MB | ca2a70c3b21c0af4dcb2a03784fbf4b1 |
| ENCFF731ZCZ.tabix.bed.gz | 1.09 MB | 55f2e9da49dc474a3439655f26ed8bd0 |
| ENCFF731ZCZ.tabix.bed.gz.tbi | 438.47 KB | 567ae5baa767225e7881db542d96b756 |
| genomic_resource.yaml | 2.49 KB | 3ffd1bee630bf91cab9639884879a5c5 |
| statistics/ |