Resource

Id ATAC-seq/ENCSR773USDcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR773USD [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)"]
Description
Labels
  • accession: ENCSR773USD
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0001150/
  • biosample_summary: Homo sapiens body of pancreas tissue female adult (51 years)
  • date_created: 2017-01-28T01:56:38.326852+00:00
  • date_released: 2017-06-21
  • doi: 10.17989/ENCSR773USD
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (51 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR773USD float

ATAC-seq_ENCSR773USD
ATAC-seq ENCSR773USD [biosample_summary="Homo sapiens body of pancreas tissue female adult (51 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR773USD [1.54, 21.2]
n
22,606,220
mean
4.92
sd
2.28

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 226062200.70% 45778
chr1 2072185 0.83% 4048
chr2 1740802 0.72% 3578
chr3 1450032 0.73% 2953
chr4 1240712 0.65% 2727
chr5 1242274 0.68% 2655
chr6 1322024 0.77% 2729
chr7 1246821 0.78% 2558
chr8 1073393 0.74% 2293
chr9 974987 0.70% 1936
chr10 986468 0.74% 2012
chr11 1141705 0.85% 2266
chr12 1092513 0.82% 2167
chr13 612228 0.54% 1309
chr14 748736 0.70% 1476
chr15 637494 0.63% 1253
chr16 753354 0.83% 1419
chr17 924391 1.11% 1719
chr18 510900 0.64% 1102
chr19 933163 1.59% 1689
chr20 511324 0.79% 1021
chr21 286711 0.61% 594
chr22 406790 0.80% 767
chrX 696206 0.45% 1503
chrY 1007 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 45778 150 2245 493.82 405
global segment-length histogram

Files

Filename Size md5
ENCFF747COP.bed.gz 1.45 MB cb330443848671213919f14e53b30283
ENCFF747COP.tabix.bed.gz 499.2 KB a1148bca97913614f70e53226df4393c
ENCFF747COP.tabix.bed.gz.tbi 300.21 KB 8f495621874dee152b0afa3df76872d3
genomic_resource.yaml 1.64 KB 8bffc6a4e9ba0bcec4fabee458c46528
statistics/