Resource

Id ATAC-seq/ENCSR769DGCcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR769DGC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)"]
Description
Labels
  • accession: ENCSR769DGC
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002084/
  • biosample_summary: Homo sapiens heart left ventricle tissue male adult (73 years)
  • date_created: 2019-07-30T07:20:35.832815+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR769DGC
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (73 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR769DGC float

ATAC-seq_ENCSR769DGC
ATAC-seq ENCSR769DGC [biosample_summary="Homo sapiens heart left ventricle tissue male adult (73 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR769DGC [1.41, 31.7]
n
60,564,159
mean
4.51
sd
2.62

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 605641591.88% 127923
chr1 5866627 2.36% 12242
chr2 4889083 2.02% 10515
chr3 3807400 1.92% 8149
chr4 2696415 1.42% 5916
chr5 3295892 1.82% 7154
chr6 3445075 2.02% 7356
chr7 3192186 2.00% 6891
chr8 2703444 1.86% 5827
chr9 2596705 1.88% 5441
chr10 3110871 2.33% 6628
chr11 3138157 2.32% 6549
chr12 2892555 2.17% 6107
chr13 1481807 1.30% 3244
chr14 1881409 1.76% 3955
chr15 2169845 2.13% 4531
chr16 2125550 2.35% 4355
chr17 2806315 3.37% 5614
chr18 1332769 1.66% 3028
chr19 2283787 3.90% 4308
chr20 1660984 2.58% 3546
chr21 826832 1.77% 1732
chr22 1384665 2.72% 2860
chrX 928708 0.60% 1869
chrY 47078 0.08% 106
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 127923 150 2897 473.44 389
global segment-length histogram

Files

Filename Size md5
ENCFF743LDX.bed.gz 4.33 MB e54106c4564d486bfb4c74a09d0542e1
ENCFF743LDX.tabix.bed.gz 1.38 MB d8b094905e01f638168fc3adf146eea0
ENCFF743LDX.tabix.bed.gz.tbi 492.31 KB b530b682f14999040ea4201a6079df46
genomic_resource.yaml 2.72 KB c934a48be39d46f6fdc1b26503cdf9e0
statistics/