Resource

Id ATAC-seq/ENCSR710SMNcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR710SMN [biosample_summary="Homo sapiens heart right ventricle tissue female adult (58 years)"]
Description
Labels
  • accession: ENCSR710SMN
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002080/
  • biosample_summary: Homo sapiens heart right ventricle tissue female adult (58 years)
  • date_created: 2019-06-02T14:27:25.556632+00:00
  • date_released: 2020-10-08
  • doi: 10.17989/ENCSR710SMN
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (58 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR710SMN float

ATAC-seq_ENCSR710SMN
ATAC-seq ENCSR710SMN [biosample_summary="Homo sapiens heart right ventricle tissue female adult (58 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR710SMN [1.54, 30.8]
n
42,095,867
mean
5.89
sd
2.54

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 420958671.31% 74445
chr1 4142157 1.66% 7204
chr2 3212839 1.33% 5845
chr3 2575255 1.30% 4688
chr4 1666321 0.88% 3030
chr5 2160783 1.19% 3933
chr6 2320296 1.36% 4115
chr7 2058198 1.29% 3714
chr8 1755293 1.21% 3207
chr9 1831573 1.32% 3208
chr10 2145381 1.60% 3861
chr11 2255920 1.67% 3933
chr12 2071011 1.55% 3642
chr13 970145 0.85% 1774
chr14 1287154 1.20% 2243
chr15 1488437 1.46% 2644
chr16 1584634 1.75% 2719
chr17 2206354 2.65% 3708
chr18 812910 1.01% 1542
chr19 1891521 3.23% 2983
chr20 1179732 1.83% 2177
chr21 523053 1.12% 953
chr22 993682 1.96% 1745
chrX 962983 0.62% 1576
chrY 235 <0.01% 1
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 74445 150 2934 565.46 455
global segment-length histogram

Files

Filename Size md5
ENCFF186CSD.bed.gz 2.98 MB d5aa3085213888aae406f620d606d603
ENCFF186CSD.tabix.bed.gz 846.83 KB 5cab9700fbe61555bb55a5d617a3240b
ENCFF186CSD.tabix.bed.gz.tbi 347.56 KB 5fb80e3d7497c78858de0544e28793ea
genomic_resource.yaml 1.66 KB 8c2e1bf5e825b1f0c617d39236c0d59b
statistics/