Resource
| Id | ATAC-seq/ENCSR706GDQ |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR706GDQ [biosample_summary="Homo sapiens GM19455"] |
| Description |
status: released biological_replicates: Rep 1 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN550BWD|/analyses/ENCAN550BWD/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR706GDQ | float |
ATAC-seq_ENCSR706GDQ |
ATAC-seq ENCSR706GDQ [biosample_summary="Homo sapiens GM19455"]
|
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[1.57, 27.6] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 46896104 | 1.46% | 82517 |
| chr1 | 4279024 | 1.72% | 7442 |
| chr2 | 4111876 | 1.70% | 7405 |
| chr3 | 3319948 | 1.67% | 6053 |
| chr4 | 2686116 | 1.41% | 5022 |
| chr5 | 2854923 | 1.57% | 5139 |
| chr6 | 3161124 | 1.85% | 5653 |
| chr7 | 2692951 | 1.69% | 4829 |
| chr8 | 2330208 | 1.61% | 4250 |
| chr9 | 1881255 | 1.36% | 3319 |
| chr10 | 2249335 | 1.68% | 3959 |
| chr11 | 2292563 | 1.70% | 4015 |
| chr12 | 2344413 | 1.76% | 4077 |
| chr13 | 1247514 | 1.09% | 2261 |
| chr14 | 1422033 | 1.33% | 2440 |
| chr15 | 1303256 | 1.28% | 2241 |
| chr16 | 1306782 | 1.45% | 2122 |
| chr17 | 1584892 | 1.90% | 2544 |
| chr18 | 1022196 | 1.27% | 1876 |
| chr19 | 1300938 | 2.22% | 1931 |
| chr20 | 981858 | 1.52% | 1695 |
| chr21 | 441132 | 0.94% | 727 |
| chr22 | 594397 | 1.17% | 925 |
| chrX | 1384484 | 0.89% | 2400 |
| chrY | 102886 | 0.18% | 192 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 82517 | 150 | 2837 | 568.32 | 469 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF160DPC.bed.gz | 3.42 MB | 17ed7f43a817c83578b19e6ad861475d |
| ENCFF160DPC.tabix.bed.gz | 930.03 KB | 5251e6055d865fc67edc8433a9ec09be |
| ENCFF160DPC.tabix.bed.gz.tbi | 401.65 KB | 1feeb5383cf2f571c510971c3611fd9d |
| genomic_resource.yaml | 1.28 KB | d6511cf89e14ecbdc480eba09f7a515a |
| statistics/ |
