Resource

Id ATAC-seq/ENCSR705RZXcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR705RZX [biosample_summary="Homo sapiens uterus tissue female adult (46 years)"]
Description
Labels
  • accession: ENCSR705RZX
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0000995/
  • biosample_summary: Homo sapiens uterus tissue female adult (46 years)
  • date_created: 2019-05-29T12:21:27.616628+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR705RZX
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (46 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR705RZX float

ATAC-seq_ENCSR705RZX
ATAC-seq ENCSR705RZX [biosample_summary="Homo sapiens uterus tissue female adult (46 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR705RZX [1.37, 27.5]
n
48,519,152
mean
3.41
sd
1.51

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 485191521.51% 88827
chr1 4384943 1.76% 7710
chr2 3952332 1.63% 7471
chr3 3017415 1.52% 5681
chr4 2531620 1.33% 4974
chr5 2701706 1.49% 5153
chr6 2874600 1.68% 5399
chr7 2592616 1.63% 4861
chr8 2277339 1.57% 4352
chr9 2029027 1.47% 3668
chr10 2260641 1.69% 4202
chr11 2532429 1.87% 4480
chr12 2240676 1.68% 4034
chr13 1309234 1.14% 2550
chr14 1474618 1.38% 2670
chr15 1496990 1.47% 2656
chr16 1577950 1.75% 2739
chr17 2114941 2.54% 3529
chr18 1039900 1.29% 2074
chr19 1894909 3.23% 2977
chr20 1174248 1.82% 2113
chr21 643492 1.38% 1175
chr22 941014 1.85% 1638
chrX 1453656 0.93% 2709
chrY 2856 <0.01% 12
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 88827 150 4265 546.22 444
global segment-length histogram

Files

Filename Size md5
ENCFF705PUR.bed.gz 3.15 MB 981dfd4d45dac178b6f605ecfdaa8a80
ENCFF705PUR.tabix.bed.gz 984.27 KB 11b61344e002b8362c397fb4b34446c5
ENCFF705PUR.tabix.bed.gz.tbi 446.74 KB 947166c23d9e162b77eb83c3d6f22088
genomic_resource.yaml 3.07 KB 0208869870338cc2b20ad447437568c2
statistics/