Resource
| Id | ATAC-seq/ENCSR705KEB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR705KEB [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"] |
| Description |
status: released biological_replicates: Rep 1 summary: female adult (59 years) output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN522HUN|/analyses/ENCAN522HUN/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Released analysis {ENCAN522HUN|/analyses/ENCAN522HUN/} has in progress subobject document {8b91b8f9-8584-4157-a71e-c004a91bd3e7|/documents/8b91b8f9-8584-4157-a71e-c004a91bd3e7/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978HXT|/files/ENCFF978HXT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with NRF value of 0.881882. audit_warning: PBC1 (PCR Bottlenecking Coefficient 1, M1/M_distinct) is the ratio of the number of genomic locations where exactly one read maps uniquely (M1) to the number of genomic locations where some reads map (M_distinct). A PBC1 value in the range 0 - 0.5 is severe bottlenecking, 0.5 - 0.8 is moderate bottlenecking, 0.8 - 0.9 is mild bottlenecking, and > 0.9 is no bottlenecking. PBC1 value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF978HXT|/files/ENCFF978HXT/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline was generated from a library with a PBC1 value of 0.88. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR705KEB | float |
ATAC-seq_ENCSR705KEB |
ATAC-seq ENCSR705KEB [biosample_summary="Homo sapiens pancreas tissue female adult (59 years)"]
|
 |
[1.34, 38.1] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 51497531 | 1.60% | 85892 |
| chr1 | 5110548 | 2.05% | 8453 |
| chr2 | 3981619 | 1.64% | 6826 |
| chr3 | 3068970 | 1.55% | 5283 |
| chr4 | 2216007 | 1.17% | 3878 |
| chr5 | 2517731 | 1.39% | 4282 |
| chr6 | 2932139 | 1.72% | 4974 |
| chr7 | 2692265 | 1.69% | 4525 |
| chr8 | 2200821 | 1.52% | 3748 |
| chr9 | 2234509 | 1.61% | 3692 |
| chr10 | 2586163 | 1.93% | 4404 |
| chr11 | 2685489 | 1.99% | 4434 |
| chr12 | 2411078 | 1.81% | 4001 |
| chr13 | 1193724 | 1.04% | 2008 |
| chr14 | 1739018 | 1.62% | 2920 |
| chr15 | 1802758 | 1.77% | 2948 |
| chr16 | 1951229 | 2.16% | 3060 |
| chr17 | 2536628 | 3.05% | 4003 |
| chr18 | 1004798 | 1.25% | 1760 |
| chr19 | 2135344 | 3.64% | 3247 |
| chr20 | 1338394 | 2.08% | 2293 |
| chr21 | 659419 | 1.41% | 1064 |
| chr22 | 1156853 | 2.28% | 1839 |
| chrX | 1340849 | 0.86% | 2245 |
| chrY | 1178 | <0.01% | 5 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 85892 | 150 | 3845 | 599.56 | 483 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF305BGH.bed.gz | 3.74 MB | 68b103bbcb6ad914e345a162de6a73f0 |
| ENCFF305BGH.tabix.bed.gz | 977.5 KB | a75fbb83326f573d2fa15663b42908c3 |
| ENCFF305BGH.tabix.bed.gz.tbi | 378.06 KB | dc1fd6ed8b625a89565c5cf705652d40 |
| genomic_resource.yaml | 2.78 KB | 7ef2b810027170ec2fc704812c923b0c |
| statistics/ |