type: position_score
table:
  filename: ENCFF647UDQ.tabix.bed.gz
  header_mode: none
  zero_based: true
  format: tabix
  chrom:
    column_index: 0
  pos_begin:
    column_index: 1
  pos_end:
    column_index: 2
scores:
- id: ATAC-seq_ENCSR700HPA
  column_index: 3
  type: float
  desc: 'ATAC-seq ENCSR700HPA [biosample_summary="Homo sapiens GM18499"]'
  histogram:
    type: number
    number_of_bins: 100
meta:
  summary: 'ATAC-seq ENCSR700HPA [biosample_summary="Homo sapiens GM18499"]'
  description: "**status**: released\n\n**biological\\_replicates**: Rep 1\n\n**summary**:\
    \ \n\n**output\\_type**: pseudoreplicated peaks\n\n**audit\\_internal\\_action**:\
    \ Released analysis {ENCAN833QRG|/analyses/ENCAN833QRG/} has in progress subobject\
    \ quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/}\n\n\
    **audit\\_not\\_compliant**: Alignment file {ENCFF617WPF|/files/ENCFF617WPF/}\
    \ processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 17107587 usable fragments.\
    \ According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing\
    \ pipeline should have > 25 million usable fragments. 20-25 million is acceptable\
    \ and < 15 million is not compliant.\n\n**audit\\_warning**: According to ENCODE4\
    \ standards, ATAC-seq assays processed by the uniform processing pipeline should\
    \ have either >150k reproducible peaks in an overlap peaks file, or >70k in an\
    \ IDR thresholded peaks file. 100-150k or 50-70k peaks respectively is acceptable,\
    \ and <100k or <50k respectively is not compliant. File(s) {ENCFF647UDQ|/files/ENCFF647UDQ/}\
    \ (overlap peaks) and {ENCFF452XUT|/files/ENCFF452XUT/} (IDR thresholded peaks)\
    \ processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline have 118210 and 56440 peaks."
  labels:
    reference_genome: hg38/genomes/GRCh38-hg38
    accession: ENCSR700HPA
    status: released
    assay_term_name: ATAC-seq
    simple_biosample_summary: ''
    biosample_summary: Homo sapiens GM18499
    replication_type: unreplicated
    biosample_ontology: /biosample-types/cell_line_CLO_0024933/
    perturbed: false
    doi: 10.17989/ENCSR700HPA
    date_created: '2020-11-24T22:02:43.774709+00:00'
    date_released: '2021-02-11'
    submitter_comment: ''