Resource

Id ATAC-seq/ENCSR694OWYcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR694OWY [biosample_summary="Homo sapiens spleen tissue male adult (26 years)"]
Description
Labels
  • accession: ENCSR694OWY
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002106/
  • biosample_summary: Homo sapiens spleen tissue male adult (26 years)
  • date_created: 2019-05-29T06:17:06.867157+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR694OWY
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: male adult (26 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR694OWY float

ATAC-seq_ENCSR694OWY
ATAC-seq ENCSR694OWY [biosample_summary="Homo sapiens spleen tissue male adult (26 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR694OWY [1.44, 22.9]
n
88,643,869
mean
4.05
sd
1.9

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 886438692.76% 136838
chr1 7299467 2.93% 11571
chr2 7895633 3.26% 12070
chr3 5607367 2.83% 8710
chr4 4726071 2.48% 7010
chr5 5228735 2.88% 7933
chr6 4946250 2.90% 7739
chr7 4990403 3.13% 7552
chr8 4562175 3.14% 6994
chr9 4003649 2.89% 6046
chr10 5055326 3.78% 7621
chr11 4390441 3.25% 6734
chr12 3921740 2.94% 6296
chr13 2905006 2.54% 4336
chr14 2835643 2.65% 4376
chr15 3116276 3.06% 4878
chr16 2942740 3.26% 4649
chr17 3062313 3.68% 4956
chr18 2758477 3.43% 4136
chr19 2267126 3.87% 3664
chr20 2655919 4.12% 4148
chr21 1250933 2.68% 1867
chr22 1668980 3.28% 2498
chrX 501106 0.32% 977
chrY 52093 0.09% 77
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 136838 150 3764 647.8 563
global segment-length histogram

Files

Filename Size md5
ENCFF243GGQ.bed.gz 4.59 MB fe82601941d9e2701a08ce91af195f6c
ENCFF243GGQ.tabix.bed.gz 1.48 MB bd6da10821d50f77e32eb13cca1c591b
ENCFF243GGQ.tabix.bed.gz.tbi 593.13 KB df68c50b148813a761b152b08c7fe57e
genomic_resource.yaml 2.51 KB c8c8789f13da932b500f58341acdcb00
statistics/