Resource

Id ATAC-seq/ENCSR689SDAcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR689SDA [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR689SDA
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0011907/
  • biosample_summary: Homo sapiens gastrocnemius medialis tissue female adult (53 years)
  • date_created: 2017-01-31T00:59:53.340421+00:00
  • date_released: 2017-06-21
  • doi: 10.17989/ENCSR689SDA
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR689SDA float

ATAC-seq_ENCSR689SDA
ATAC-seq ENCSR689SDA [biosample_summary="Homo sapiens gastrocnemius medialis tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR689SDA [1.63, 26.5]
n
26,425,070
mean
5.53
sd
2.45

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 264250700.82% 46198
chr1 2644069 1.06% 4579
chr2 2040175 0.84% 3665
chr3 1655013 0.83% 2977
chr4 1010976 0.53% 1754
chr5 1292828 0.71% 2305
chr6 1504619 0.88% 2658
chr7 1352374 0.85% 2394
chr8 1073760 0.74% 1928
chr9 1183520 0.86% 2037
chr10 1275375 0.95% 2280
chr11 1414833 1.05% 2406
chr12 1215274 0.91% 2104
chr13 547920 0.48% 963
chr14 829772 0.78% 1422
chr15 933745 0.92% 1667
chr16 1072676 1.19% 1831
chr17 1418510 1.70% 2414
chr18 464853 0.58% 847
chr19 1187742 2.03% 1932
chr20 702086 1.09% 1251
chr21 335497 0.72% 589
chr22 656556 1.29% 1141
chrX 612353 0.39% 1052
chrY 544 <0.01% 2
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 46198 150 2384 572 474
global segment-length histogram

Files

Filename Size md5
ENCFF849YKD.bed.gz 1.83 MB e2b23f2495b6015d4e7e43e6a9691139
ENCFF849YKD.tabix.bed.gz 531.25 KB 335f5068933e699b941bd33c807e4efa
ENCFF849YKD.tabix.bed.gz.tbi 247.46 KB 31a6502b4ab8d1923b8ecced12835678
genomic_resource.yaml 1.66 KB 9c0642603e87d140668c77b145971c77
statistics/