Resource
| Id | ATAC-seq/ENCSR682ETE |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR682ETE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"] |
| Description |
status: revoked biological_replicates: Rep 1 summary: female child (16 years) output_type: pseudoreplicated peaks audit_internal_action: Revoked analysis {ENCAN827MZV|/analyses/ENCAN827MZV/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_internal_action: Revoked analysis {ENCAN827MZV|/analyses/ENCAN827MZV/} has in progress subobject document {478e04b6-ad64-4710-8316-50153de3d8ea|/documents/478e04b6-ad64-4710-8316-50153de3d8ea/} |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR682ETE | float |
ATAC-seq_ENCSR682ETE |
ATAC-seq ENCSR682ETE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"]
|
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[1.3, 38.8] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 107393458 | 3.34% | 162649 |
| chr1 | 10418976 | 4.19% | 15548 |
| chr2 | 8725509 | 3.60% | 13497 |
| chr3 | 7181899 | 3.62% | 11207 |
| chr4 | 5073729 | 2.67% | 8053 |
| chr5 | 5662618 | 3.12% | 8894 |
| chr6 | 6426663 | 3.76% | 9818 |
| chr7 | 5439659 | 3.41% | 8361 |
| chr8 | 4761751 | 3.28% | 7428 |
| chr9 | 4615724 | 3.34% | 6913 |
| chr10 | 5321846 | 3.98% | 8169 |
| chr11 | 5397623 | 4.00% | 7963 |
| chr12 | 5155072 | 3.87% | 7815 |
| chr13 | 2728756 | 2.39% | 4281 |
| chr14 | 3384266 | 3.16% | 5125 |
| chr15 | 3592274 | 3.52% | 5371 |
| chr16 | 3577028 | 3.96% | 5155 |
| chr17 | 4924546 | 5.91% | 6920 |
| chr18 | 2395185 | 2.98% | 3743 |
| chr19 | 3457175 | 5.90% | 4680 |
| chr20 | 2768859 | 4.30% | 4199 |
| chr21 | 1415685 | 3.03% | 2074 |
| chr22 | 2150833 | 4.23% | 3034 |
| chrX | 2815757 | 1.80% | 4393 |
| chrY | 2025 | <0.01% | 8 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 162649 | 150 | 4280 | 660.28 | 541 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF431ZSD.bed.gz | 6.62 MB | 7b90c502ed4fa321f571d0515d2f9dbe |
| ENCFF431ZSD.tabix.bed.gz | 1.79 MB | 5595124851c6a702d6387dab0bd8c0d9 |
| ENCFF431ZSD.tabix.bed.gz.tbi | 526.01 KB | cb440dd65d86d46f50347f2792a8ab79 |
| genomic_resource.yaml | 1.62 KB | 11491f289578c447647614f1c93f543f |
| statistics/ |
