Resource

Id ATAC-seq/ENCSR682ETEcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR682ETE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"]
Description
Labels
  • accession: ENCSR682ETE
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002168/
  • biosample_summary: Homo sapiens left lung tissue female child (16 years)
  • date_created: 2019-07-30T08:20:18.990538+00:00
  • date_released: 2020-08-05
  • doi: 10.17989/ENCSR682ETE
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female child (16 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR682ETE float

ATAC-seq_ENCSR682ETE

ATAC-seq ENCSR682ETE [biosample_summary="Homo sapiens left lung tissue female child (16 years)"]
HISTOGRAM FOR ATAC-seq_ENCSR682ETE [1.3, 38.8]
n
107,393,458
mean
5.53
sd
2.59

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 1073934583.34% 162649
chr1 10418976 4.19% 15548
chr2 8725509 3.60% 13497
chr3 7181899 3.62% 11207
chr4 5073729 2.67% 8053
chr5 5662618 3.12% 8894
chr6 6426663 3.76% 9818
chr7 5439659 3.41% 8361
chr8 4761751 3.28% 7428
chr9 4615724 3.34% 6913
chr10 5321846 3.98% 8169
chr11 5397623 4.00% 7963
chr12 5155072 3.87% 7815
chr13 2728756 2.39% 4281
chr14 3384266 3.16% 5125
chr15 3592274 3.52% 5371
chr16 3577028 3.96% 5155
chr17 4924546 5.91% 6920
chr18 2395185 2.98% 3743
chr19 3457175 5.90% 4680
chr20 2768859 4.30% 4199
chr21 1415685 3.03% 2074
chr22 2150833 4.23% 3034
chrX 2815757 1.80% 4393
chrY 2025 <0.01% 8
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 162649 150 4280 660.28 541
global segment-length histogram

Files

Filename Size md5
ENCFF431ZSD.bed.gz 6.62 MB 7b90c502ed4fa321f571d0515d2f9dbe
ENCFF431ZSD.tabix.bed.gz 1.79 MB 5595124851c6a702d6387dab0bd8c0d9
ENCFF431ZSD.tabix.bed.gz.tbi 526.01 KB cb440dd65d86d46f50347f2792a8ab79
genomic_resource.yaml 1.62 KB 11491f289578c447647614f1c93f543f
statistics/