Resource

Id ATAC-seq/ENCSR679NRJcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR679NRJ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour"]
Description
Labels
  • accession: ENCSR679NRJ
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/in_vitro_differentiated_cells_CL_0000451/
  • biosample_summary: Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour
  • date_created: 2016-10-12T15:51:40.712000+00:00
  • date_released: 2017-01-19
  • doi: 10.17989/ENCSR679NRJ
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: treated with 100 ng/mL lipopolysaccharide for 1 hour
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR679NRJ float

ATAC-seq_ENCSR679NRJ
ATAC-seq ENCSR679NRJ [biosample_summary="Homo sapiens dendritic cell treated with 100 ng/mL lipopolysaccharide for 1 hour"]
 HISTOGRAM FOR ATAC-seq_ENCSR679NRJ [1.65, 35.9]
n
37,164,640
mean
7.84
sd
4.18

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 371646401.16% 94479
chr1 3312391 1.33% 8319
chr2 3098814 1.28% 8085
chr3 2514341 1.27% 6525
chr4 1875379 0.99% 4967
chr5 2074428 1.14% 5462
chr6 2300704 1.35% 5911
chr7 2015172 1.26% 5099
chr8 1800894 1.24% 4668
chr9 1468792 1.06% 3698
chr10 1801459 1.35% 4658
chr11 1834371 1.36% 4648
chr12 1834787 1.38% 4680
chr13 954778 0.83% 2527
chr14 1166036 1.09% 2928
chr15 1133522 1.11% 2866
chr16 1221395 1.35% 2933
chr17 1426269 1.71% 3439
chr18 894491 1.11% 2376
chr19 1340993 2.29% 2911
chr20 943307 1.46% 2407
chr21 455322 0.97% 1153
chr22 578482 1.14% 1397
chrX 1117332 0.72% 2818
chrY 1181 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 94479 150 2170 393.36 328
global segment-length histogram

Files

Filename Size md5
ENCFF985WZA.bed.gz 2.75 MB 492d8784befe07b82a441bbdecb0b470
ENCFF985WZA.tabix.bed.gz 1011.83 KB 41d378acc638755353ec851f06cf808c
ENCFF985WZA.tabix.bed.gz.tbi 446.88 KB 67e8ba33052781f686cdacfeeef73f71
genomic_resource.yaml 1.57 KB e9058fa4b2903d69978824ff92052190
statistics/