Resource

Id ATAC-seq/ENCSR670REKcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR670REK [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR670REK
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0004550/
  • biosample_summary: Homo sapiens gastroesophageal sphincter tissue female adult (53 years)
  • date_created: 2016-04-26T19:00:40.307430+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR670REK
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR670REK float

ATAC-seq_ENCSR670REK
ATAC-seq ENCSR670REK [biosample_summary="Homo sapiens gastroesophageal sphincter tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR670REK [1.44, 31.6]
n
46,904,349
mean
5.8
sd
2.88

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 469043491.46% 79754
chr1 4578615 1.84% 7700
chr2 3591991 1.48% 6194
chr3 2939599 1.48% 5124
chr4 1983150 1.04% 3476
chr5 2389227 1.32% 4188
chr6 2616179 1.53% 4482
chr7 2369741 1.49% 4092
chr8 1985875 1.37% 3522
chr9 2145329 1.55% 3680
chr10 2399612 1.79% 4146
chr11 2399500 1.78% 4007
chr12 2319836 1.74% 3904
chr13 1068031 0.93% 1835
chr14 1484596 1.39% 2526
chr15 1636148 1.60% 2755
chr16 1663419 1.84% 2729
chr17 2345798 2.82% 3795
chr18 906449 1.13% 1614
chr19 1917783 3.27% 2949
chr20 1290079 2.00% 2223
chr21 604126 1.29% 1023
chr22 1027444 2.02% 1717
chrX 1240780 0.80% 2069
chrY 1042 <0.01% 4
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 79754 150 2643 588.11 497
global segment-length histogram

Files

Filename Size md5
ENCFF454SGY.bed.gz 3.31 MB acd7ef8d2fdb1a2ac20e7cdd8953109d
ENCFF454SGY.tabix.bed.gz 909.45 KB b39abf5205d2cebe51656e8c747bf5db
ENCFF454SGY.tabix.bed.gz.tbi 366.5 KB 4716accb8354c3f078c17510aa5739f5
genomic_resource.yaml 1.68 KB da30be48e589537d942eaf176d2a5344
statistics/