Resource
| Id | ATAC-seq/ENCSR660WSB |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR660WSB [biosample_summary="Homo sapiens DND-41"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2, Rep 3 summary: output_type: pseudoreplicated peaks audit_internal_action: Released analysis {ENCAN022AWY|/analyses/ENCAN022AWY/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_not_compliant: Alignment file {ENCFF538YYI|/files/ENCFF538YYI/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 18838391 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_not_compliant: Alignment file {ENCFF080WSN|/files/ENCFF080WSN/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 19065448 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. audit_warning: Alignment file {ENCFF626KDS|/files/ENCFF626KDS/} processed by ATAC-seq ENCODE4 v1.9.1 GRCh38 pipeline has 21457282 usable fragments. According to ENCODE4 standards, ATAC-seq assays processed by the uniform processing pipeline should have > 25 million usable fragments. 20-25 million is acceptable and < 15 million is not compliant. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR660WSB | float |
ATAC-seq_ENCSR660WSB |
ATAC-seq ENCSR660WSB [biosample_summary="Homo sapiens DND-41"]
|
 |
[1.25, 47] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 53007933 | 1.65% | 95355 |
| chr1 | 5115086 | 2.05% | 9055 |
| chr2 | 4508786 | 1.86% | 8406 |
| chr3 | 3539420 | 1.78% | 6610 |
| chr4 | 2430274 | 1.28% | 4658 |
| chr5 | 2874941 | 1.58% | 5415 |
| chr6 | 3053393 | 1.79% | 5532 |
| chr7 | 2774107 | 1.74% | 5111 |
| chr8 | 2218577 | 1.53% | 4137 |
| chr9 | 1761452 | 1.27% | 3154 |
| chr10 | 2451113 | 1.83% | 4451 |
| chr11 | 2569981 | 1.90% | 4496 |
| chr12 | 2531201 | 1.90% | 4465 |
| chr13 | 1429293 | 1.25% | 2733 |
| chr14 | 1865770 | 1.74% | 3353 |
| chr15 | 1435683 | 1.41% | 2532 |
| chr16 | 1782877 | 1.97% | 3018 |
| chr17 | 2326260 | 2.79% | 3760 |
| chr18 | 1123835 | 1.40% | 2165 |
| chr19 | 2048496 | 3.49% | 3241 |
| chr20 | 1517368 | 2.35% | 2797 |
| chr21 | 838437 | 1.79% | 1487 |
| chr22 | 1118370 | 2.20% | 1880 |
| chrX | 1559441 | 1.00% | 2671 |
| chrY | 133772 | 0.23% | 228 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 95355 | 150 | 3245 | 555.9 | 443 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF095ATB.bed.gz | 3.75 MB | 0e6fcf428ada27dbd02cfd216fd9ad3b |
| ENCFF095ATB.tabix.bed.gz | 1.04 MB | c3ac569eef63733760cca73b048b331e |
| ENCFF095ATB.tabix.bed.gz.tbi | 420.32 KB | a27d529d0cedcfc81ab7dbd830c21695 |
| genomic_resource.yaml | 2.44 KB | 582e319cd14750e25d0dba6dcbb584e2 |
| statistics/ |