Resource

Id ATAC-seq/ENCSR654UYPcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR654UYP [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)"]
Description
Labels
  • accession: ENCSR654UYP
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0008367/
  • biosample_summary: Homo sapiens breast epithelium tissue female adult (53 years)
  • date_created: 2016-04-26T18:49:41.650311+00:00
  • date_released: 2016-06-15
  • doi: 10.17989/ENCSR654UYP
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (53 years)
  • status: released
  • submitter_comment:

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR654UYP float

ATAC-seq_ENCSR654UYP
ATAC-seq ENCSR654UYP [biosample_summary="Homo sapiens breast epithelium tissue female adult (53 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR654UYP [1.51, 26.1]
n
34,589,463
mean
4.77
sd
2.14

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 345894631.08% 65211
chr1 3370597 1.35% 6240
chr2 2756642 1.14% 5233
chr3 2252083 1.14% 4308
chr4 1797838 0.95% 3537
chr5 1847820 1.02% 3606
chr6 2121322 1.24% 4020
chr7 1775419 1.11% 3394
chr8 1586833 1.09% 3068
chr9 1470680 1.06% 2770
chr10 1556231 1.16% 2947
chr11 1831281 1.36% 3397
chr12 1664637 1.25% 3083
chr13 852195 0.75% 1652
chr14 1069733 1.00% 1980
chr15 1046683 1.03% 1967
chr16 1158064 1.28% 2134
chr17 1557714 1.87% 2771
chr18 738322 0.92% 1464
chr19 1304498 2.23% 2283
chr20 817129 1.27% 1547
chr21 454706 0.97% 854
chr22 658417 1.30% 1213
chrX 898045 0.58% 1733
chrY 2574 <0.01% 10
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 65211 150 2968 530.42 436
global segment-length histogram

Files

Filename Size md5
ENCFF653XEE.bed.gz 2.46 MB f94c7806be3cb1db46d5e077d27e373d
ENCFF653XEE.tabix.bed.gz 728.07 KB a67b6594032383cb236f6f3235a5861f
ENCFF653XEE.tabix.bed.gz.tbi 356.63 KB 069c4d32dda3432f947c71e3f15360f1
genomic_resource.yaml 1.64 KB c9e097a3e7c5bb9260d5cbaf9286bbab
statistics/