Resource

Id ATAC-seq/ENCSR653ZWWcontent_copy
Type position_score
Version 0
Summary ATAC-seq ENCSR653ZWW [biosample_summary="Homo sapiens bile duct tissue female adult (47 years)"]
Description
Labels
  • accession: ENCSR653ZWW
  • assay_term_name: ATAC-seq
  • biosample_ontology: /biosample-types/tissue_UBERON_0002394/
  • biosample_summary: Homo sapiens bile duct tissue female adult (47 years)
  • date_created: 2019-05-29T07:22:01.198668+00:00
  • date_released: 2022-06-16
  • doi: 10.17989/ENCSR653ZWW
  • perturbed: False
  • reference_genome: hg38/genomes/GRCh38-hg38
  • replication_type: unreplicated
  • simple_biosample_summary: female adult (47 years)
  • status: released
  • submitter_comment: Despite lower enrichment scores and peaks, sequence-based predictive models (neural networks) fit to these data reveal useful motifs and motif annotations. Given the value of these rare samples, we release them with an enrichment QC warning indicating that these data likely have lower sensitivity for detecting accessible regulatory elements.

Scores (1)

ID Type Default annotation Description Histogram Range Summary
ATAC-seq_ENCSR653ZWW float

ATAC-seq_ENCSR653ZWW
ATAC-seq ENCSR653ZWW [biosample_summary="Homo sapiens bile duct tissue female adult (47 years)"]
 HISTOGRAM FOR ATAC-seq_ENCSR653ZWW [1.38, 24.2]
n
57,410,579
mean
4.24
sd
2.25

n counts base pairs; sd is the population standard deviation.

Coverage

Chromosome Covered positions Covered % Segments
all chromosomes 574105791.78% 107912
chr1 5437375 2.18% 9986
chr2 4430807 1.83% 8559
chr3 3376453 1.70% 6521
chr4 2735306 1.44% 5524
chr5 2901093 1.60% 5699
chr6 3183802 1.86% 6118
chr7 2986375 1.87% 5763
chr8 2510089 1.73% 4951
chr9 2514306 1.82% 4699
chr10 2641520 1.97% 5116
chr11 2989151 2.21% 5557
chr12 2619969 1.97% 4917
chr13 1422752 1.24% 2783
chr14 1813519 1.69% 3369
chr15 1891344 1.85% 3470
chr16 2065652 2.29% 3643
chr17 2849826 3.42% 4904
chr18 1276850 1.59% 2553
chr19 2454929 4.19% 3934
chr20 1582343 2.46% 2982
chr21 806921 1.73% 1462
chr22 1319836 2.60% 2341
chrX 1597154 1.02% 3048
chrY 3207 0.01% 13
3342 contigs with no values (129077085 bp) 0 0.00% 0

Segment lengths

segments min max mean median
segments 107912 150 2874 532.01 434
global segment-length histogram

Files

Filename Size md5
ENCFF672FAZ.bed.gz 3.84 MB 86a33fc2f5b077b55ffaf40ece66aa2b
ENCFF672FAZ.tabix.bed.gz 1.17 MB c2adbb39bac4979fc025945bea0b9a3c
ENCFF672FAZ.tabix.bed.gz.tbi 463.49 KB a7444a187764ecff2f72145f0b6c9177
genomic_resource.yaml 2.18 KB 4dce37e818ba176816934cad63bb2d6a
statistics/