Resource
| Id | ATAC-seq/ENCSR653VSR |
|---|---|
| Type | position_score |
| Version | 0 |
| Summary | ATAC-seq ENCSR653VSR [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell female adult (39 years) treated with 1 \u03BCg/mL anti-CD40 for 72 hours,\ \ 10 \u03BCg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"] |
| Description |
status: released biological_replicates: Rep 1, Rep 2 summary: female adult (39 years) treated with 1 μg/mL anti-CD40 for 72 hours, 10 μg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours output_type: replicated peaks audit_internal_action: Released analysis {ENCAN697RWU|/analyses/ENCAN697RWU/} has in progress subobject quality standard {encode4-atac-seq|/quality-standards/encode4-atac-seq/} audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF070YLW|/files/ENCFF070YLW/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.89499. audit_warning: NRF (Non Redundant Fraction) is equal to the result of the division of the number of reads after duplicates removal by the total number of reads. An NRF value < 0.7 is poor complexity, between 0.7 and 0.9 is moderate complexity, and >= 0.9 high complexity. NRF value > 0.9 is recommended, but > 0.7 is acceptable. ENCODE processed file {ENCFF990FRL|/files/ENCFF990FRL/} processed by ATAC-seq ENCODE4 v1.10.0 GRCh38 pipeline was generated from a library with NRF value of 0.889588. |
| Labels |
|
Scores (1)
| ID | Type | Default annotation | Description | Histogram | Range | Summary |
|---|---|---|---|---|---|---|
| ATAC-seq_ENCSR653VSR | float |
ATAC-seq_ENCSR653VSR |
ATAC-seq ENCSR653VSR [biosample_summary="Homo sapiens stimulated activated naive\ \ B cell female adult (39 years) treated with 1 \u03BCg/mL anti-CD40 for 72 hours,\ \ 10 \u03BCg/mL anti-IgM for 72 hours, 100 ng/mL Interleukin-4 for 72 hours"]
|
 |
[1.3, 40.9] |
|
n counts base pairs; sd is the population standard deviation.
Coverage
| Chromosome | Covered positions | Covered % | Segments |
|---|---|---|---|
| all chromosomes | 70791697 | 2.20% | 125426 |
| chr1 | 6801544 | 2.73% | 11831 |
| chr2 | 5503494 | 2.27% | 10002 |
| chr3 | 4461373 | 2.25% | 8206 |
| chr4 | 2878642 | 1.51% | 5421 |
| chr5 | 3568660 | 1.97% | 6573 |
| chr6 | 4370360 | 2.56% | 7839 |
| chr7 | 3581792 | 2.25% | 6392 |
| chr8 | 3033050 | 2.09% | 5627 |
| chr9 | 2995671 | 2.16% | 5305 |
| chr10 | 3306807 | 2.47% | 5938 |
| chr11 | 3487803 | 2.58% | 6020 |
| chr12 | 3488501 | 2.62% | 6207 |
| chr13 | 1689193 | 1.48% | 3133 |
| chr14 | 2365946 | 2.21% | 4155 |
| chr15 | 2279407 | 2.23% | 4047 |
| chr16 | 2541888 | 2.81% | 4235 |
| chr17 | 3377779 | 4.06% | 5522 |
| chr18 | 1467247 | 1.83% | 2734 |
| chr19 | 2935791 | 5.01% | 4573 |
| chr20 | 1931875 | 3.00% | 3443 |
| chr21 | 935931 | 2.00% | 1631 |
| chr22 | 1598149 | 3.14% | 2630 |
| chrX | 2189288 | 1.40% | 3956 |
| chrY | 1506 | <0.01% | 6 |
| 3342 contigs with no values (129077085 bp) | 0 | 0.00% | 0 |
Segment lengths
| segments | min | max | mean | median | |
|---|---|---|---|---|---|
| segments | 125426 | 150 | 3392 | 564.41 | 450 |
Files
| Filename | Size | md5 |
|---|---|---|
| ENCFF182JHG.bed.gz | 5.12 MB | 53013dc7dacb0e61b095b0a15a580ab0 |
| ENCFF182JHG.tabix.bed.gz | 1.37 MB | 6b83053a69852f56ca34b25177ca5900 |
| ENCFF182JHG.tabix.bed.gz.tbi | 459.23 KB | fdb89a6f5828ab8d2c31af254d67b36a |
| genomic_resource.yaml | 3.21 KB | 6a0ef842be8f75721d2c52f475a59733 |
| statistics/ |